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Report for CCDS5991.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5991.2 Public Homo sapiens 8 DLC1 24 110 108 CCDS HistoryNCBI Gene:10395Re-query CCDS DB by CCDS ID:5991.2Re-query CCDS DB by GeneID:10395See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 5991.1
The coding region has been updated to represent an alternative splicing pattern at the 3' end, resulting in an alternative protein C-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5991.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511869.1 ENSP00000425878.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511869.1Link to Ensembl Protein Viewer:ENSP00000425878.1Re-query CCDS DB by Nucleotide ID:ENST00000511869Re-query CCDS DB by Protein ID:ENSP00000425878
Original member Current member NCBI NM_024767.5 NP_079043.3 Accepted alive Link to Nucleotide Sequence:NM_024767.5Link to Protein Sequence:NP_079043.3Re-query CCDS DB by Nucleotide ID:NM_024767Re-query CCDS DB by Protein ID:NP_079043Link to BLAST:NP_079043.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079043.3 463 Q96QB1-5 463 100% 0 0

Chromosomal Locations for CCDS 5991.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13305225 13305302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13393553 13393693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13401470 13401619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13499049 13500071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGTCTGTAGCTATCAGAAAGAGAAGCTGGGAAGAACATGTGACCCACTGGATGGGACAGCCTTTTAATT
CTGATGATCGTAACACAGCATGTCATCATGGACTAGTAGCTGACAGCTTGCAGGCAAGTATGGAAAAAGA
TGCAACTCTAAATGTGGACCGCAAAGAGAAGTGTGTTTCACTACCTGACTGCTGTCATGGATCAGAGCTG
AGAGATTTTCCTGGGAGGCCAATGGGTCATCTTTCAAAGGATGTGGACGAAAATGACAGCCATGAAGGTG
AAGATCAGTTTCTTTCTCTGGAAGCCAGCACAGAAACACTAGTGCATGTTTCTGATGAGGATAACAATGC
TGATTTATGCCTTACAGATGATAAACAGGTTTTAAATACCCAAGGGCAGAAAACATCAGGCCAACATATG
ATCCAAGGAGCAGGCTCCTTAGAAAAGGCACTGCCCATCATACAAAGTAACCAAGTTTCTTCTAACTCCT
GGGGAATAGCTGGTGAAACTGAATTAGCACTGGTAAAAGAAAGTGGGGAGAGAAAAGTTACTGACTCTAT
AAGTAAAAGCCTGGAGCTTTGCAATGAAATAAGCTTAAGTGAAATAAAAGATGCACCCAAAGTAAATGCA
GTGGATACTTTGAACGTGAAAGATATTGCACCTGAGAAACAATTGCTTAACTCTGCTGTAATTGCTCAGC
AACGAAGGAAACCTGACCCCCCTAAAGATGAAAATGAAAGAAGCACCTGCAATGTAGTACAAAATGAGTT
CTTGGATACTCCTTGCACAAACAGAGGACTGCCATTATTAAAAACAGATTTTGGAAGCTGCCTTCTGCAG
CCTCCTTCCTGCCCCAATGGAATGTCAGCTGAAAATGGCCTGGAGAAGAGTGGTTTTTCACAACATCAAA
ACAAAAGTCCACCAAAGGTCAAGGCAGAAGATGGCATGCAGTGTTTACAATTAAAGGAGACCCTGGCCAC
CCAGGAACCCACAGATAACCAAGTCAGACTTCGTAAGAGAAAGGAAATAAGAGAAGATCGAGATAGGGCG
CGGCTGGACTCCATGGTGCTGCTGATTATGAAACTGGACCAGCTTGATCAGGACATAGAAAATGCCCTCA
GCACCAGCTCCTCTCCATCAGGCACACCAACAAACCTGCGGCGGCACGTTCCTGATCTGGAATCAGGATC
TGAAAGTGGAGCAGATACCATTTCAGTAAATCAGACACGAGTAAATTTGTCTTCTGACACTGAGTCCACG
GACCTCCCATCTTCCACTCCAGTAGCCAATTCTGGAACCAAACCCAAGACTACGGCTATTCAAGGTATTT
CAGAGAAGGAAAAGGCTGGTAAGTTGACATTTTGGTTCTGTTTTCTCGCCAATCTATTTTAG

Translation (463 aa):
MSVAIRKRSWEEHVTHWMGQPFNSDDRNTACHHGLVADSLQASMEKDATLNVDRKEKCVSLPDCCHGSEL
RDFPGRPMGHLSKDVDENDSHEGEDQFLSLEASTETLVHVSDEDNNADLCLTDDKQVLNTQGQKTSGQHM
IQGAGSLEKALPIIQSNQVSSNSWGIAGETELALVKESGERKVTDSISKSLELCNEISLSEIKDAPKVNA
VDTLNVKDIAPEKQLLNSAVIAQQRRKPDPPKDENERSTCNVVQNEFLDTPCTNRGLPLLKTDFGSCLLQ
PPSCPNGMSAENGLEKSGFSQHQNKSPPKVKAEDGMQCLQLKETLATQEPTDNQVRLRKRKEIREDRDRA
RLDSMVLLIMKLDQLDQDIENALSTSSSPSGTPTNLRRHVPDLESGSESGADTISVNQTRVNLSSDTEST
DLPSSTPVANSGTKPKTTAIQGISEKEKAGKLTFWFCFLANLF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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