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Report for CCDS60089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60089.1 Public Homo sapiens 1 STK40 24 110 108 CCDS HistoryNCBI Gene:83931Re-query CCDS DB by CCDS ID:60089.1Re-query CCDS DB by GeneID:83931See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373130.7 ENSP00000362222.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373130.7Link to Ensembl Protein Viewer:ENSP00000362222.3Re-query CCDS DB by Nucleotide ID:ENST00000373130Re-query CCDS DB by Protein ID:ENSP00000362222
Original member Current member NCBI NM_001282546.2 NP_001269475.1 Accepted alive Link to Nucleotide Sequence:NM_001282546.2Link to Protein Sequence:NP_001269475.1Re-query CCDS DB by Nucleotide ID:NM_001282546Re-query CCDS DB by Protein ID:NP_001269475Link to BLAST:NP_001269475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269475.1 440 Q8N2I9-4 440 100% 0 0

Chromosomal Locations for CCDS 60089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36341755 36341973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343364 36343448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36343860 36343979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36344120 36344264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36348700 36348815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36354364 36354416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36355206 36355433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358239 36358382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36358737 36358837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36361221 36361332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGAAGCGGAGAGCATCAGACAGAGGAGCTGGGGAAACGTCGGCCAGGGCCAAGGCTCTAGGAAGTGGGA
TTTCTGGAAATAATGCAAAGAGAGCTGGACCATTCATCCTTGCTCTCTGTGCCGTAGGTCCCCGTCTGGG
CAACTCACCGGTGCCAAGCATAGTGCAGTGTTTGGCGAGGAAAGATGGCACGGATGACTTCTATCAGCTG
AAGATCCTGACCCTGGAGGAGAGGGGGGACCAAGGCATAGAGAGCCAGGAAGAGCGGCAGGGCAAGATGC
TGCTGCACACCGAGTACTCACTGCTGTCTCTCCTGCACACGCAGGATGGCGTGGTGCACCACCACGGCCT
CTTCCAGGACCGCACCTGTGAAATCGTTGAGGACACAGAATCCAGCCGGATGGTTAAGAAGATGAAGAAG
CGCATCTGCCTCGTCCTGGACTGCCTCTGTGCTCATGACTTCAGCGATAAGACCGCTGACCTCATCAACC
TGCAGCACTACGTCATCAAGGAGAAGAGGCTCAGCGAGAGGGAGACTGTGGTAATCTTCTACGACGTGGT
CCGCGTGGTGGAGGCCCTGCACCAGAAAAATATCGTGCACAGAGACCTGAAGCTGGGGAACATGGTGCTC
AACAAGAGGACACATCGGATAACCATCACCAACTTCTGCCTCGGGAAGCATCTGGTGAGCGAGGGGGACC
TGCTGAAGGACCAGAGAGGGAGCCCTGCCTACATCAGTCCCGACGTGCTCAGCGGCCGGCCGTACCGTGG
CAAGCCCAGTGACATGTGGGCCCTGGGCGTGGTGCTCTTCACCATGCTGTATGGCCAGTTCCCCTTCTAC
GACAGCATCCCGCAGGAGCTCTTCCGCAAGATCAAGGCTGCCGAGTATACCATTCCTGAGGATGGACGGG
TTTCTGAGAACACCGTGTGTCTCATCCGGAAGCTGCTGGTCCTTGACCCCCAGCAGCGCCTGGCCGCCGC
CGACGTCCTGGAGGCCCTCAGTGCCATCATTGCATCATGGCAGTCCCTGTCATCTCTGAGTGGGCCTTTG
CAAGTGGTTCCTGACATTGATGACCAAATGAGCAATGCGGATAGCTCCCAGGAGGCGAAGGTGACGGAGG
AGTGCTCCCAGTACGAGTTTGAGAACTACATGCGTCAGCAGCTGCTGCTGGCCGAGGAGAAGAGCTCCAT
CCATGACGCCCGGAGCTGGGTACCCAAGCGGCAGTTCGGCAGCGCACCACCGGTGCGACGGCTGGGCCAC
GACGCACAGCCCATGACCTCCTTGGACACGGCCATCCTGGCGCAGCGCTACCTGCGGAAATAA

Translation (440 aa):
MKRRASDRGAGETSARAKALGSGISGNNAKRAGPFILALCAVGPRLGNSPVPSIVQCLARKDGTDDFYQL
KILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVKKMKK
RICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVL
NKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFY
DSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPL
QVVPDIDDQMSNADSSQEAKVTEECSQYEFENYMRQQLLLAEEKSSIHDARSWVPKRQFGSAPPVRRLGH
DAQPMTSLDTAILAQRYLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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