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Report for CCDS60583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60583.1 Public Homo sapiens 10 CCSER2 24 110 108 CCDS HistoryNCBI Gene:54462Re-query CCDS DB by CCDS ID:60583.1Re-query CCDS DB by GeneID:54462See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 60583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543283.2 ENSP00000439944.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543283.2Link to Ensembl Protein Viewer:ENSP00000439944.1Re-query CCDS DB by Nucleotide ID:ENST00000543283Re-query CCDS DB by Protein ID:ENSP00000439944
Original member Current member NCBI NM_001284243.2 NP_001271172.1 Accepted alive Link to Nucleotide Sequence:NM_001284243.2Link to Protein Sequence:NP_001271172.1Re-query CCDS DB by Nucleotide ID:NM_001284243Re-query CCDS DB by Protein ID:NP_001271172Link to BLAST:NP_001271172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271172.1 261 Q9H7U1-4 261 100% 0 0

Chromosomal Locations for CCDS 60583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84425745 84425893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84438512 84438707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84463933 84464016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84470372 84470458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84477575 84477664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84499875 84499959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84513449 84513543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGAACCGCTTTGACCGACCAGACAGAAATGTTCGGCAGCCTCAGGAAGGTTTTTGGAAAAGGCCACCCC
AGAGGTGGAGTGGACAGGAGCATTACCACCTCAGCCACCCTGACCACTATCATCACCATGGAAAAAGTGA
CTTGAGCAGAGGCTCTCCCTATAGAGAATCTCCTTTGGGTCATTTTGAAAGCTATGGAGGGATGCCCTTT
TTCCAGGCTCAGAAGATGTTTGTTGATGTACCAGAAAATACAGTGATACTGGATGAGATGACCCTTCGGC
ACATGGTTCAGGATTGCACTGCTGTAAAAACTCAGTTACTCAAACTGAAACGTCTCCTGCATCAGCATGA
TGGAAGTGGTTCATTGCATGATATTCAACTGTCATTGCCATCCAGTCCAGAACCAGAAGATGGTGATAAA
GTATATAAGAATGAAGATTTATTAAATGAAATAAAACAACTTAAAGACGAAATAAAGAAAAAAGATGAAA
AGATCCAACTATTAGAACTTCAGCTTGCAACTCAGCATATCTGCCACCAAAAATGTAAAGAGGAAAAATG
CACTTATGCTGATAAATATACCCAAACACCCTGGAGACGAATTCCTGGTGGGTATTCTGCTCCCTCCTTC
TCTCCTTGGCAGGGCTCCTTCCAGGGGATCCCACGGACTGTTCCACCGCACCGCAGACAGACCTCAAGTA
CTACAGCCTTCCAGCAGCCTTCCCAGACCCACAGATCACACCCAGGGAAAACTAATAAAGCCACAACGTA
TCGAGGCCCGCAGTGA

Translation (261 aa):
MNRFDRPDRNVRQPQEGFWKRPPQRWSGQEHYHLSHPDHYHHHGKSDLSRGSPYRESPLGHFESYGGMPF
FQAQKMFVDVPENTVILDEMTLRHMVQDCTAVKTQLLKLKRLLHQHDGSGSLHDIQLSLPSSPEPEDGDK
VYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSAPSF
SPWQGSFQGIPRTVPPHRRQTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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