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Report for CCDS61117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61117.1 Public Homo sapiens 12 TROAP 24 110 108 CCDS HistoryNCBI Gene:10024Re-query CCDS DB by CCDS ID:61117.1Re-query CCDS DB by GeneID:10024See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61117.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000548311.5 ENSP00000448313.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548311.5Link to Ensembl Protein Viewer:ENSP00000448313.1Re-query CCDS DB by Nucleotide ID:ENST00000548311Re-query CCDS DB by Protein ID:ENSP00000448313
Original member Current member NCBI NM_001278324.2 NP_001265253.1 Accepted alive Link to Nucleotide Sequence:NM_001278324.2Link to Protein Sequence:NP_001265253.1Re-query CCDS DB by Nucleotide ID:NM_001278324Re-query CCDS DB by Protein ID:NP_001265253Link to BLAST:NP_001265253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265253.1 126 Q12815-3 126 100% 0 0

Chromosomal Locations for CCDS 61117.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 49323609 49323752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49323845 49324037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 49324231 49324274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGACCACCCGGCAAGCCACGAAGGATCCCCTCCTCCGGGGTGTATCTCCTACCCCTAGCAAGATTCCGG
TACGCTCTCAGAAACGCACGCCTTTCCCCACTGTTACATCGTGCGCCGTGGACCAGGAGAACCAAGATCC
AAGGAGATGGGTGCAGAAACCACCGCTCAATATTCAACGCCCCCTCGTTGATTCAGCAGGCCCCAGGCCG
AAAGCCAGGCACCAGGCAGAGACATCACAAAGATTGGTGGGGATCAGTCAGCCTCGGAACCCCTTGGAAG
AGCTCAGGCCTAGCCCTAGGGGTCAAAATGTGGGGCCTGGGCCCCCTGCCCAGACAGGTGCCATGGCTTG
TACCTGTAATCACAGCTACTCAGGAGGCTGA

Translation (126 aa):
MTTRQATKDPLLRGVSPTPSKIPVRSQKRTPFPTVTSCAVDQENQDPRRWVQKPPLNIQRPLVDSAGPRP
KARHQAETSQRLVGISQPRNPLEELRPSPRGQNVGPGPPAQTGAMACTCNHSYSGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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