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Report for CCDS6125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6125.1 Public Homo sapiens 8 AP3M2 24 110 108 CCDS HistoryNCBI Gene:10947Re-query CCDS DB by CCDS ID:6125.1Re-query CCDS DB by GeneID:10947See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000174653.3 ENSP00000174653.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000174653.3Link to Ensembl Protein Viewer:ENSP00000174653.3Re-query CCDS DB by Nucleotide ID:ENST00000174653Re-query CCDS DB by Protein ID:ENSP00000174653
Original member Current member EBI ENST00000396926.8 ENSP00000380132.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396926.8Link to Ensembl Protein Viewer:ENSP00000380132.3Re-query CCDS DB by Nucleotide ID:ENST00000396926Re-query CCDS DB by Protein ID:ENSP00000380132
Original member Current member EBI ENST00000518421.5 ENSP00000428787.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518421.5Link to Ensembl Protein Viewer:ENSP00000428787.1Re-query CCDS DB by Nucleotide ID:ENST00000518421Re-query CCDS DB by Protein ID:ENSP00000428787
Original member Current member NCBI NM_001134296.2 NP_001127768.1 Accepted alive Link to Nucleotide Sequence:NM_001134296.2Link to Protein Sequence:NP_001127768.1Re-query CCDS DB by Nucleotide ID:NM_001134296Re-query CCDS DB by Protein ID:NP_001127768Link to BLAST:NP_001127768.1
Original member Current member NCBI NM_006803.4 NP_006794.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006803.4Link to Protein Sequence:NP_006794.1Re-query CCDS DB by Nucleotide ID:NM_006803Re-query CCDS DB by Protein ID:NP_006794Link to BLAST:NP_006794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127768.1 418 P53677-1 418 100% 0 0
NP_006794.1 418 P53677-1 418 100% 0 0

Chromosomal Locations for CCDS 6125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 42154688 42154960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42157941 42158112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42162281 42162418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42165071 42165156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42165427 42165560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42167164 42167371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42167666 42167810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 42168961 42169061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGATCCATAGTCTTTTCTTGATCAACTCCTCTGGAGACATTTTCCTGGAGAAACATTGGAAAAGTGTGG
TCAGCCGTTCTGTTTGTGATTACTTTTTTGAGGCGCAAGAGAGAGCTACTGAGGCAGAAAATGTGCCTCC
GGTTATCCCTACCCCTCACCACTATCTCTTAAGTGTTTACCGCCACAAGATCTTTTTTGTGGCCGTGATC
CAGACGGAGGTCCCCCCTCTGTTTGTCATTGAGTTTCTTCACCGAGTGGTGGACACATTTCAGGATTATT
TTGGAGTCTGTTCAGAGCCAGTGATCAAAGACAATGTAGTTGTGGTTTATGAGGTATTGGAAGAGATGCT
TGACAATGGTTTTCCATTGGCTACCGAGTCGAACATTCTTAAAGAACTCATAAAGCCTCCTACCATCCTT
CGAACGGTTGTCAACACCATCACAGGAAGCACGAATGTGGGTGACCAGCTTCCCACTGGGCAGCTGTCAG
TGGTGCCTTGGCGACGGACTGGGGTGAAATATACCAACAATGAGGCCTATTTTGATGTGATTGAAGAGAT
TGATGCAATTATTGATAAATCAGGCTCCACAATTACTGCTGAGATCCAGGGGGTGATTGATGCCTGTGTC
AAGCTGACTGGCATGCCAGACCTTACACTTTCCTTCATGAACCCTAGGTTGTTGGATGATGTCAGCTTCC
ATCCTTGTGTTCGTTTCAAACGCTGGGAATCTGAGCGCATCCTCTCCTTCATCCCTCCTGATGGAAACTT
CCGCCTGCTGTCTTACCATGTCAGTGCACAGAATCTGGTTGCAATCCCAGTGTATGTCAAACATAACATC
AGTTTCCGGGACAGTAGTTCCCTTGGACGCTTTGAAATAACGGTGGGACCCAAGCAGACGATGGGGAAGA
CCATTGAGGGAGTGACTGTCACCAGCCAGATGCCCAAGGGGGTCCTGAACATGAGCCTTACTCCATCACA
GGGGACACACACATTCGACCCAGTCACAAAGATGCTGTCTTGGGATGTAGGAAAAATAAATCCACAAAAG
CTACCAAGTTTGAAGGGGACCATGAGTCTTCAGGCTGGAGCTTCCAAACCAGATGAAAACCCCACAATTA
ACCTGCAGTTTAAGATCCAGCAGCTGGCCATTTCTGGACTCAAGGTGAATCGTCTGGATATGTATGGAGA
AAAGTACAAACCCTTTAAGGGCATAAAATACATGACCAAAGCTGGGAAGTTCCAAGTTCGAACCTGA

Translation (418 aa):
MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHKIFFVAVI
QTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTIL
RTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAYFDVIEEIDAIIDKSGSTITAEIQGVIDACV
KLTGMPDLTLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLSYHVSAQNLVAIPVYVKHNI
SFRDSSSLGRFEITVGPKQTMGKTIEGVTVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQK
LPSLKGTMSLQAGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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