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Report for CCDS61496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61496.1 Public Homo sapiens 14 DPF3 24 110 108 CCDS HistoryNCBI Gene:8110Re-query CCDS DB by CCDS ID:61496.1Re-query CCDS DB by GeneID:8110See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 61496.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366353.8 ENSP00000381791.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366353.8Link to Ensembl Protein Viewer:ENSP00000381791.3Re-query CCDS DB by Nucleotide ID:ENST00000366353Re-query CCDS DB by Protein ID:ENSP00000381791
Original member Current member NCBI NM_001280544.2 NP_001267473.1 Accepted alive Link to Nucleotide Sequence:NM_001280544.2Link to Protein Sequence:NP_001267473.1Re-query CCDS DB by Nucleotide ID:NM_001280544Re-query CCDS DB by Protein ID:NP_001267473Link to BLAST:NP_001267473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001267473.1 412 Q92784-3 412 99.7573% 0 1

Chromosomal Locations for CCDS 61496.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 72671136 72671338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72674240 72674368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72693076 72693213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72714423 72714501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72723633 72723728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72731807 72731934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72753264 72753371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72771733 72771893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72892147 72892343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTTTTATGGCAGAATAAATGGGCGTAACTTCGCCGCATCCTCGCTGCCGGTTGCTTTCGCTGCAACAC
CGCTGATGCTGTTTCTACCGAACCCACAACTGATTTTCAGTTTCCCCATTTCCAGCCGAAATCACATAAC
CGGGCTGATGCCACCTGGTAAACTCAAGTTAGAGAACCTATTTCACATGTGCACCAGGCTCGGGGACCAG
TTCTACAAGGAAGCCATTGAGCACTGCCGGAGTTACAACTCACGGCTGTGTGCAGAGCGCAGCGTGCGTC
TTCCCTTCCTGGACTCACAGACTGGGGTGGCCCAGAACAACTGCTACATCTGGATGGAGAAGAGGCACCG
AGGCCCAGGCCTTGCCCCGGGCCAGCTGTATACATACCCTGCCCGCTGCTGGCGCAAGAAGAGACGATTG
CACCCACCTGAAGATCCAAAACTGCGGCTGCTGGAGATAAAACCTGAAGTGGAGCTTCCCCTGAAGAAGG
ATGGGTTCACCTCAGAGAGCACCACGCTGGAAGCCTTGCTCCGTGGCGAGGGGGTTGAGAAGAAGGTGGA
TGCCAGGGAGGAGGAAAGCATCCAGGAAATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGG
AATGAAGAAGAGGATTTGGAAGAGGATATTCCCAAGCGAAAGAACAGGACTAGAGGACGGGCTCGCGGCT
CTGCAGGGGGCAGGAGGAGGCACGACGCCGCCTCTCAGGAAGACCACGACAAACCTTACGTCTGTGACAT
CTGTGGCAAGCGCTACAAGAACCGACCGGGGCTCAGCTACCACTATGCTCACACTCACCTGGCCAGCGAG
GAGGGGGATGAAGCTCAAGACCAGGAGACTCGGTCCCCACCCAACCACAGAAATGAGAACCACAGGCCCC
AGAAAGGACCGGATGGAACAGTCATTCCCAATAACTACTGTGACTTCTGCTTGGGGGGCTCCAACATGAA
CAAGAAGAGTGGGCGGCCTGAAGAGCTGGTGTCCTGCGCAGACTGTGGACGCTCTGCTCATTTGGGAGGA
GAAGGCAGGAAGGAGAAGGAGGCAGCGGCCGCAGCACGTACCACGGAGGACTTATTCGGTTCCACGTCAG
AAAGTGACACGTCAACTTTCCACGGCTTTGATGAGGACGATTTGGAAGAGCCTCGCTCCTGTCGAGGACG
CCGCAGTGGCCGGGGTTCGCCCACAGCAGATAAAAAGGGCAGTTGCTAA

Translation (412 aa):
MFYGRINGRNFAASSLPVAFAATPLMLFLPNPQLIFSFPISSRNHITGLMPPGKLKLENLFHMCTRLGDQ
FYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRL
HPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEG
NEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASE
EGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSAHLGG
EGRKEKEAAAAARTTEDLFGSTSESDTSTFHGFDEDDLEEPRSCRGRRSGRGSPTADKKGSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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