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Report for CCDS6156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6156.1 Public Homo sapiens 8 RGS20 24 110 108 CCDS HistoryNCBI Gene:8601Re-query CCDS DB by CCDS ID:6156.1Re-query CCDS DB by GeneID:8601See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276500.4 ENSP00000276500.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276500.4Link to Ensembl Protein Viewer:ENSP00000276500.4Re-query CCDS DB by Nucleotide ID:ENST00000276500Re-query CCDS DB by Protein ID:ENSP00000276500
Original member NCBI NM_003702.4 NP_003693.2 Updated not alive Link to Nucleotide Sequence:NM_003702.4Link to Protein Sequence:NP_003693.2Re-query CCDS DB by Nucleotide ID:NM_003702Re-query CCDS DB by Protein ID:NP_003693
Current member NCBI NM_003702.5 NP_003693.2 Accepted alive Link to Nucleotide Sequence:NM_003702.5Link to Protein Sequence:NP_003693.2Re-query CCDS DB by Nucleotide ID:NM_003702Re-query CCDS DB by Protein ID:NP_003693Link to BLAST:NP_003693.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003693.2 241 O76081-6 241 100% 0 0

Chromosomal Locations for CCDS 6156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 53881016 53881084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53939576 53939724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53946665 53946748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53954076 53954310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 53958270 53958458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (726 nt):
ATGCGCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGCTCC
AGATGGGATCAGAGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCCGCCCAGGACACACCAGGCGCCGC
CCCAGGCCAGCCCGGAGCGGGGAGTCGCGGGTCCAACGCATGCTGCTTCTGCTGGTGCTGCTGTTGTAGC
TGCTCGTGTCTCACTGTTAGAAACCAGGAAGATCAGAGGCCCACAATAGCTTCCCACGAACTCAGAGCAG
ATCTTCCAACCTGGGAAGAAAGCCCTGCTCCTACTCTGGAAGAAGTCAACGCCTGGGCTCAGTCATTTGA
CAAATTAATGGTCACTCCAGCAGGAAGGAATGCATTCCGTGAATTCCTCCGAACAGAATTCAGTGAGGAA
AATATGCTCTTCTGGATGGCCTGTGAGGAACTGAAAAAGGAAGCTAATAAAAACATTATTGAAGAGAAAG
CAAGGATAATCTATGAAGACTACATTTCTATACTTTCTCCTAAGGAGGTGAGCTTAGACTCCCGGGTGAG
AGAAGTGATCAACAGAAACATGGTGGAGCCATCCCAACACATATTCGATGATGCTCAACTTCAGATTTAC
ACCCTGATGCACAGAGACTCATATCCTCGATTCATGAACTCTGCTGTCTATAAGGACTTGCTTCAGTCCT
TATCGGAGAAATCTATTGAAGCATAG

Translation (241 aa):
MRTADGGEPAGASSPAGRVDGGLQMGSERMEMRKRQMPAAQDTPGAAPGQPGAGSRGSNACCFCWCCCCS
CSCLTVRNQEDQRPTIASHELRADLPTWEESPAPTLEEVNAWAQSFDKLMVTPAGRNAFREFLRTEFSEE
NMLFWMACEELKKEANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIY
TLMHRDSYPRFMNSAVYKDLLQSLSEKSIEA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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