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Report for CCDS6234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6234.1 Public Homo sapiens 8 SNX16 24 110 108 CCDS HistoryNCBI Gene:64089Re-query CCDS DB by CCDS ID:6234.1Re-query CCDS DB by GeneID:64089See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345957.9 ENSP00000322652.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000345957.9Link to Ensembl Protein Viewer:ENSP00000322652.4Re-query CCDS DB by Nucleotide ID:ENST00000345957Re-query CCDS DB by Protein ID:ENSP00000322652
Original member Current member EBI ENST00000396330.6 ENSP00000379621.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396330.6Link to Ensembl Protein Viewer:ENSP00000379621.2Re-query CCDS DB by Nucleotide ID:ENST00000396330Re-query CCDS DB by Protein ID:ENSP00000379621
Original member Current member NCBI NM_022133.4 NP_071416.2 Accepted alive Link to Nucleotide Sequence:NM_022133.4Link to Protein Sequence:NP_071416.2Re-query CCDS DB by Nucleotide ID:NM_022133Re-query CCDS DB by Protein ID:NP_071416Link to BLAST:NP_071416.2
Original member Current member NCBI NM_152836.3 NP_690049.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152836.3Link to Protein Sequence:NP_690049.1Re-query CCDS DB by Nucleotide ID:NM_152836Re-query CCDS DB by Protein ID:NP_690049Link to BLAST:NP_690049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071416.2 344 P57768-1 344 100% 0 0
NP_690049.1 344 P57768-1 344 100% 0 0

Chromosomal Locations for CCDS 6234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 81801497 81801593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81802380 81802499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81803092 81803228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81815325 81815394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81823792 81823940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81829430 81829516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81839612 81839986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGCAACTCCTTATGTCCCAGTTCCTATGCCCATAGGAAACTCTGCTTCCAGTTTTACAACAAACAGAA
ATCAAAGAAGTTCTTCTTTTGGCAGTGTCTCAACAAGCTCAAATTCTTCTAAGGGCCAGTTAGAAGACTC
AAATATGGGTAATTTTAAACAGACAAGTGTTCCTGATCAAATGGATAATACTTCATCTGTCTGTAGCAGT
CCCCTCATTAGGACTAAATTTACAGGTACAGCTTCTTCCATTGAGTATTCTACTAGACCAAGAGACACTG
AAGAACAAAATCCGGAAACAGTGAATTGGGAAGATAGACCATCTACACCTACTATACTGGGTTATGAAGT
GATGGAAGAAAGAGCTAAATTTACTGTATATAAAATACTAGTAAAGAAAACCCCAGAAGAAAGCTGGGTA
GTTTTCAGAAGATACACTGACTTCTCTAGGCTTAATGACAAATTAAAAGAGATGTTTCCAGGTTTTCGAC
TAGCACTTCCTCCAAAACGCTGGTTTAAAGATAATTACAATGCTGACTTTTTAGAAGACAGACAATTAGG
ATTACAAGCGTTTCTTCAAAATTTAGTAGCTCACAAGGACATTGCTAACTGCCTTGCAGTGAGAGAATTT
CTTTGTTTGGATGATCCACCGGGTCCATTTGATAGCCTAGAAGAAAGCAGGGCATTCTGTGAAACTTTAG
AAGAGACAAACTACCGCTTACAGAAAGAACTACTTGAAAAACAAAAGGAGATGGAATCACTAAAGAAACT
GCTCAGTGAGAAGCAACTTCATATAGACACTTTAGAGAACAGAATCAGAACATTGTCTTTAGAACCTGAA
GAATCACTGGATGTGTCAGAAACAGAAGGTGAACAGATCCTAAAGGTGGAGTCCTCTGCACTTGAGGTTG
ATCAAGATGTCCTGGATGAAGAATCTAGAGCTGATAATAAACCATGCTTAAGTTTTAGTGAACCTGAAAA
TGCTGTATCAGAGATAGAAGTAGCAGAAGTGGCATATGATGCTGAAGAAGACTAA

Translation (344 aa):
MATPYVPVPMPIGNSASSFTTNRNQRSSSFGSVSTSSNSSKGQLEDSNMGNFKQTSVPDQMDNTSSVCSS
PLIRTKFTGTASSIEYSTRPRDTEEQNPETVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESWV
VFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREF
LCLDDPPGPFDSLEESRAFCETLEETNYRLQKELLEKQKEMESLKKLLSEKQLHIDTLENRIRTLSLEPE
ESLDVSETEGEQILKVESSALEVDQDVLDEESRADNKPCLSFSEPENAVSEIEVAEVAYDAEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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