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Report for CCDS62460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62460.1 Public Homo sapiens 18 SERPINB8 24 110 108 CCDS HistoryNCBI Gene:5271Re-query CCDS DB by CCDS ID:62460.1Re-query CCDS DB by GeneID:5271See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62460.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542677.5 ENSP00000438328.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542677.5Link to Ensembl Protein Viewer:ENSP00000438328.1Re-query CCDS DB by Nucleotide ID:ENST00000542677Re-query CCDS DB by Protein ID:ENSP00000438328
Original member Current member NCBI NM_001276490.2 NP_001263419.1 Accepted alive Link to Nucleotide Sequence:NM_001276490.2Link to Protein Sequence:NP_001263419.1Re-query CCDS DB by Nucleotide ID:NM_001276490Re-query CCDS DB by Protein ID:NP_001263419Link to BLAST:NP_001263419.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263419.1 192 P50452-3 192 100% 0 0

Chromosomal Locations for CCDS 62460.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63983701 63983721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63985093 63985245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63986874 63987278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGCTCTTTAAAACCAACGAGGAAAAAAAGACAGTGCAGATGATGTTTAAGGAAGCTAAGTTTAAAATGG
GGTATGCGGATGAGGTACACACCCAGGTCCTGGAGCTGCCCTATGTGGAAGAGGAGCTGAGCATGGTCAT
TCTGCTTCCCGATGACAACACGGACCTCGCCGTGGTGGAAAAAGCACTTACATATGAGAAATTCAAAGCC
TGGACAAATTCAGAAAAGTTGACAAAAAGTAAGGTTCAAGTTTTCCTTCCCAGATTAAAGCTGGAGGAGA
GTTATGACTTGGAGCCTTTCCTTCGAAGATTAGGAATGATCGATGCTTTTGACGAAGCCAAGGCAGACTT
TTCTGGAATGTCAACTGAGAAGAATGTGCCTCTGTCCAAGGTTGCCCACAAGTGCTTCGTGGAGGTCAAT
GAGGAAGGCACAGAGGCTGCCGCAGCCACTGCTGTGGTCAGGAATTCCCGGTGCAGCAGAATGGAGCCAA
GATTCTGTGCAGACCACCCTTTTCTTTTCTTCATCAGGCACCACAAAACCAACTGCATCTTGTTCTGTGG
CAGGTTCTCTTCTCCGTAA

Translation (192 aa):
MLFKTNEEKKTVQMMFKEAKFKMGYADEVHTQVLELPYVEEELSMVILLPDDNTDLAVVEKALTYEKFKA
WTNSEKLTKSKVQVFLPRLKLEESYDLEPFLRRLGMIDAFDEAKADFSGMSTEKNVPLSKVAHKCFVEVN
EEGTEAAAATAVVRNSRCSRMEPRFCADHPFLFFIRHHKTNCILFCGRFSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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