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Report for CCDS62642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62642.1 Public Homo sapiens 19 LIN37 24 110 108 CCDS HistoryNCBI Gene:55957Re-query CCDS DB by CCDS ID:62642.1Re-query CCDS DB by GeneID:55957See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62642.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301159.14 ENSP00000301159.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301159.14Link to Ensembl Protein Viewer:ENSP00000301159.7Re-query CCDS DB by Nucleotide ID:ENST00000301159Re-query CCDS DB by Protein ID:ENSP00000301159
Original member Current member NCBI NM_019104.3 NP_061977.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019104.3Link to Protein Sequence:NP_061977.1Re-query CCDS DB by Nucleotide ID:NM_019104Re-query CCDS DB by Protein ID:NP_061977Link to BLAST:NP_061977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061977.1 246 Q96GY3 246 100% 0 0

Chromosomal Locations for CCDS 62642.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35748725 35748758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35752176 35752251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35752434 35752484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35752804 35752833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35752914 35752999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35753087 35753253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35754017 35754157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35754246 35754319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35754393 35754474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGTTCCCTGTGAAGGTGAAAGTGGAGAAATCAGAGCTGGAGATGGCCAAAGCCCGGAACCAACTGGATG
CTGTCTTGCAGTGTCTGCTGGAGAAGAGTCACATGGACAGGGAGCGTCTGGATGAGGAAGCTGGGAAAAC
ACCCTCAGACACCCACAATAAGGACTGCTCCATCGCAGCCACTGGCAAAAGGCCATCTGCCCGCTTCCCC
CACCAGCGGAGGAAGAAGAGGAGGGAGATGGATGATGGGCTGGCTGAGGGAGGGCCGCAGCGATCCAACA
CATATGTGATCAAGCTGTTCGACCGGAGCGTGGACTTGGCCCAGTTCAGCGAGAACACGCCACTGTACCC
AATCTGCCGCGCCTGGATGCGCAACAGCCCCTCTGTGCGCGAGCGTGAATGCTCTCCCAGCTCACCCCTG
CCCCCGCTGCCTGAGGATGAGGAGGGCTCAGAGGTAACCAACAGCAAGAGTCGTGATGTGTACAAGCTGC
CGCCACCCACACCCCCGGGGCCACCCGGAGATGCCTGCAGATCCCGCATCCCATCTCCACTGCAGCCTGA
GATGCAGGGCACCCCTGACGATGAGCCCTCTGAGCCCGAGCCCTCACCCTCCACACTCATCTATCGCAAC
ATGCAGCGCTGGAAACGCATCCGCCAGAGGTGGAAGGAGGCCTCTCATCGGAACCAGCTTCGTTACTCAG
AAAGCATGAAGATCCTACGAGAGATGTACGAACGACAGTGA

Translation (246 aa):
MFPVKVKVEKSELEMAKARNQLDAVLQCLLEKSHMDRERLDEEAGKTPSDTHNKDCSIAATGKRPSARFP
HQRRKKRREMDDGLAEGGPQRSNTYVIKLFDRSVDLAQFSENTPLYPICRAWMRNSPSVRERECSPSSPL
PPLPEDEEGSEVTNSKSRDVYKLPPPTPPGPPGDACRSRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYRN
MQRWKRIRQRWKEASHRNQLRYSESMKILREMYERQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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