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Report for CCDS62856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62856.1 Public Homo sapiens 2 SLC66A3 24 110 108 CCDS HistoryNCBI Gene:130814Re-query CCDS DB by CCDS ID:62856.1Re-query CCDS DB by GeneID:130814See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62856.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441908.6 ENSP00000406148.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441908.6Link to Ensembl Protein Viewer:ENSP00000406148.2Re-query CCDS DB by Nucleotide ID:ENST00000441908Re-query CCDS DB by Protein ID:ENSP00000406148
Original member Current member NCBI NM_001282710.2 NP_001269639.1 Accepted alive Link to Nucleotide Sequence:NM_001282710.2Link to Protein Sequence:NP_001269639.1Re-query CCDS DB by Nucleotide ID:NM_001282710Re-query CCDS DB by Protein ID:NP_001269639Link to BLAST:NP_001269639.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269639.1 188 Q8N755-2 188 100% 0 0

Chromosomal Locations for CCDS 62856.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11155547 11155689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160466 11160548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11160625 11160694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11164204 11164261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11171925 11172045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11177737 11177828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGAGGCGGCGCTGCTGGGGCTGTGTAACTGGAGCACGCTGGGCGTGTGCGCCGCGCTGAAGCTGCCGC
AGATCTCCGCTGTGCTAGCGGCGCGCAGCGCGCGGGGCCTCAGCCTTCCGAGTTTACTTCTGGAGCTGGC
AGGATTCCTGGTGTTTCTGCGGTACCAGTGTTACTATGGGTATCCGCCGCTGACCTACCTGGAGTACCCC
ATCCTCATCGCGCAAGATGTCATCCTCCTGCTCTGTATCTTTCATTTTAACGGGAACGTGAAGCAGGCCA
CTCCTTACATCGCTGTATTGGTGTCTTCTTGGTTCATCCTTGCCCTGCAGAAGTGGATCATAGACCTGGC
CATGAATCTATGTACTTTCATCAGCGCGGCCAGTAAGTTTGCACAGCTCCAGTGTCTGTGGAAGACGAGA
GACTCAGGAACTGTGAGTGCGCTGACTTGGAGCCTCTCTTCCTATACCTGTGCAATTCTTCTACGTTTTG
TGATCATGCTGGCTTTAAATATATGGGTAACAGTGACAGTACTTCGCTACCGGAAGACCGCTATAAAGGC
TGAATGA

Translation (188 aa):
MEAALLGLCNWSTLGVCAALKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYP
ILIAQDVILLLCIFHFNGNVKQATPYIAVLVSSWFILALQKWIIDLAMNLCTFISAASKFAQLQCLWKTR
DSGTVSALTWSLSSYTCAILLRFVIMLALNIWVTVTVLRYRKTAIKAE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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