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Report for CCDS6299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6299.1 Public Homo sapiens 8 CTHRC1 24 110 108 CCDS HistoryNCBI Gene:115908Re-query CCDS DB by CCDS ID:6299.1Re-query CCDS DB by GeneID:115908See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6299.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330295.10 ENSP00000330523.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330295.10Link to Ensembl Protein Viewer:ENSP00000330523.5Re-query CCDS DB by Nucleotide ID:ENST00000330295Re-query CCDS DB by Protein ID:ENSP00000330523
Original member Current member NCBI NM_138455.4 NP_612464.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138455.4Link to Protein Sequence:NP_612464.1Re-query CCDS DB by Nucleotide ID:NM_138455Re-query CCDS DB by Protein ID:NP_612464Link to BLAST:NP_612464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612464.1 243 Q96CG8-1 243 100% 0 0

Chromosomal Locations for CCDS 6299.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 103371657 103371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103375738 103375959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103378027 103378243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 103382458 103382600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGCGACCCCAGGGCCCCGCCGCCTCCCCGCAGCGGCTCCGCGGCCTCCTGCTGCTCCTGCTGCTGCAGC
TGCCCGCGCCGTCGAGCGCCTCTGAGATCCCCAAGGGGAAGCAAAAGGCGCAGCTCCGGCAGAGGGAGGT
GGTGGACCTGTATAATGGAATGTGCTTACAAGGGCCAGCAGGAGTGCCTGGTCGAGACGGGAGCCCTGGG
GCCAATGGCATTCCGGGTACACCTGGGATCCCAGGTCGGGATGGATTCAAAGGAGAAAAGGGGGAATGTC
TGAGGGAAAGCTTTGAGGAGTCCTGGACACCCAACTACAAGCAGTGTTCATGGAGTTCATTGAATTATGG
CATAGATCTTGGGAAAATTGCGGAGTGTACATTTACAAAGATGCGTTCAAATAGTGCTCTAAGAGTTTTG
TTCAGTGGCTCACTTCGGCTAAAATGCAGAAATGCATGCTGTCAGCGTTGGTATTTCACATTCAATGGAG
CTGAATGTTCAGGACCTCTTCCCATTGAAGCTATAATTTATTTGGACCAAGGAAGCCCTGAAATGAATTC
AACAATTAATATTCATCGCACTTCTTCTGTGGAAGGACTTTGTGAAGGAATTGGTGCTGGATTAGTGGAT
GTTGCTATCTGGGTTGGTACTTGTTCAGATTACCCAAAAGGAGATGCTTCTACTGGATGGAATTCAGTTT
CTCGCATCATTATTGAAGAACTACCAAAATAA

Translation (243 aa):
MRPQGPAASPQRLRGLLLLLLLQLPAPSSASEIPKGKQKAQLRQREVVDLYNGMCLQGPAGVPGRDGSPG
ANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVL
FSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVD
VAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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