CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS63026.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
63026.1 |
Public |
Homo sapiens |
2 |
R3HDM1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:23518](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:63026.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:23518](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 63026.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409478.5 |
ENSP00000386457.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409478.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386457.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409478](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386457](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000628915.2 |
ENSP00000486837.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000628915.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000486837.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000628915](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000486837](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001282799.2 |
NP_001269728.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001282799.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001269728.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001282799](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001269728](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001269728.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001269728.1 |
971 |
Q15032-2 |
971 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 63026.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2916 nt): ATGAGGATGTCTGATACTGTTACTGTAAAAGATGAAACTGCAACAATGAAGGATTTGGAGGCAGAAGTGA AAGATACAACCAGAGTTGAAAATCTTATCAAATCAGAAAACTATGGGAAGATTTTGGTAGAGAAGAATGA ACATTGTATTGAGAACAATATAGATTTGCAGGAGAAAATTCAGATCCAGTTAACACAATCATTTGAGAAA GAAGAGAAGCCCTCAAAAGATGAAGCAGAAAAAGAAAAGGCCAGTGATAAGTTGCCCAGAAAAATGTTAT CAAGAGATTCCAGTCAAGAATACACTGATTCAACTGGCATAGATCTACATGAATTTTTAGTAAATACATT AAAAAACAATCCCAGGGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAAT AATGAGTCTCCACGTAAAAAATTCCCCCCAATGACATCTTACCATAGGATGCTATTACACAGAGTAGCCG CTTACTTTGGATTAGACCACAATGTTGATCAGAGTGGGAAGTCTGTCATAGTAAACAAAACTAGCAATAC AAGAATACCTGATCAGAAATTTAATGAACATATTAAGGATGATAAAGGTGAAGACTTTCAGAAACGTTAT ATCCTCAAGAGAGATAACTCTAGCTTTGACAAAGATGATAACCAGATGAGAATACGTTTGAAAGATGACA GAAGAAGCAAATCTATAGAAGAAAGAGAAGAAGAGTACCAGAGAGCCAGAGACCGAATATTTTCCCAAGA TTCCCTGTGTTCCCAAGAGAATTACATTATTGACAAAAGACTCCAAGACGAGGATGCCAGTAGTACCCAG CAGAGGCGCCAGATATTTAGAGTTAATAAAGATGCTTCAGGGAGATCTACAAATAGCCATCAAAGCAGCA CTGAGAATGAGTTGAAGTACTCGGAACCACGACCCTGGAGCAGCACAGATTCAGACAGCTCTCTTCGAAA CCTGAAACCTGCTGTAACCAAAGCCAGCAGCTTCAGTGGAATCTCAGTCCTGACAAGAGGTGATAGTTCT GGAAGCAGCAAAAGCATAGGCAGGCTTTCAAAAACAGGTCAGCCCTTCATAAACCCAGATGGGAGTCCAG TTGTGTATAATCCTCCTATGACTCAACAACCAGTTAGATCCCAAGTGCCTGGACCTCCACAGCCACCTCT GCCAGCCCCACCTCAACAACCAGCAGCTAATCACATTTTCTCACAGCAGGATAACCTAGGGTCTCAGTTT AGCCACATGAGTCTTGCTCGCCAGCCATCTGCTGATGGTTCTGACCCTCATGCCGCCATGTTCCAGTCCA CTGTGGTTCTTCAGTCTCCACAGCAGTCTGGTTATATCATGACAGCAGCCCCTCCACCACATCCTCCTCC ACCGCCACCACCACCACCTCCTCCTCCTCCCCTACCACCTGGGCAGCCAGTCCCTACTGCTGGATATCCT GCCTCTGGTCATCCTGTCAGCCAGCCTGTGCTCCAGCAGCAGGGATATATTCAGCAGCCATCACCACAGA TGCCAGCCTGTTATTGCGCTCCAGGCCACTATCACTCCAGCCAACCTCAGTATCGCCCAGTCCCTTCTGT TCATTACAATTCACATCTAAACCAACCACTGCCACAACCTGCGCAGCAGACAGGTTATCAAGTTATACCC AACCAGCAGCAAAACTACCAAGGAATAGTTGGAGTTCAGCAACCCCAGAGTCAGAGCCTAGTCAGTGGCC AACCCAACAGCATTGGAAATCAGATTCAAGGAGTGGTCATCCCCTATACTTCAGTGCCAACATATCAGGT TTCACTGCCTCAAGGTTCTCAAGGAATTCCCCATCAGACTTATCAACAGCCTGTTATGTTCCCTAATCAG TCTAATCAAGGATCTATGCCCACAACAGGAATGCCTGTTTACTATAGTGTCATTCCACCTGGTCAACAAA ACAATTTAAGCTCTTCAGTAGGTTACCTGCAACATCCAGGATCAGAACAAGTACAATTTCCTCGAACCAC TTCACCATGCAGTTCCCAGCAGCTTCAAGGCCACCAATGTACAGCTGGACCACCACCGCCACCTGGTGGG GGGATGGTGATGATGCAGCTCAGTGTACCAAACAATCCACAATCTTGTGCCCACTCACCCCCGCAGTGGA AACAAAACAAATATTACTGTGATCACCAGAGAGGACAGAAGTGTGTAGAATTTAGCAGTGTAGACAATAT TGTCCAGCACAGCCCTCAACTCAGTAGCCCCATTATTTCACCAGCTCAGTCGCCAGCACCAGCTCAGCTG TCCACCCTGAAAACTGTACGTCCCTCTGGACCACCACTTTCCATCATGCCCCAATTTTCTAGACCTTTTG TCCCCGGGCAAGGAGATTCCAGGTATCCATTACTTGGCCAGCCACTGCAGTACAATCCTCCTGCTGTTCT GCACGGACACATTCCAAACCAACAGGGTCAGCCTGGCAGCAGGCATGGAAACCGAGGAAGGAGACAAGCT AAAAAAGCTGCATCCACAGACCTTGGAGCAGGAGAAACAGTTGTTGGGAAGGTCTTGGAAATTACTGAAC TACCAGATGGAATAACTCGCATGGAAGCTGAAAAGCTTTTTGGGGAACTCTTTAAAATTGGCGCCAAGAT CCGGTGGCTCCGGGACCCCCAGTCCCAACCACGTCGTCACCCCCTCTGCTGTGGCAGTGGGGACAACACT GCCAACCCTGAACGCTCTAAACCCAGTGACTTGGCCTCCACCTACACCGTCTTAGCCACATTCCCCTCCA TTTCAGCTGCACAGAATGCACTGAAGAAACAAATTAACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAA GAAGCACTATGACTTTCACATTTTGGAAAGGGCAAGTTCTCAGTAA
Translation (971 aa): MRMSDTVTVKDETATMKDLEAEVKDTTRVENLIKSENYGKILVEKNEHCIENNIDLQEKIQIQLTQSFEK EEKPSKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGN NESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRY ILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQ QRRQIFRVNKDASGRSTNSHQSSTENELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSS GSSKSIGRLSKTGQPFINPDGSPVVYNPPMTQQPVRSQVPGPPQPPLPAPPQQPAANHIFSQQDNLGSQF SHMSLARQPSADGSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPPPPPPPPPPPPLPPGQPVPTAGYP ASGHPVSQPVLQQQGYIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVIP NQQQNYQGIVGVQQPQSQSLVSGQPNSIGNQIQGVVIPYTSVPTYQVSLPQGSQGIPHQTYQQPVMFPNQ SNQGSMPTTGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCTAGPPPPPGG GMVMMQLSVPNNPQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQL STLKTVRPSGPPLSIMPQFSRPFVPGQGDSRYPLLGQPLQYNPPAVLHGHIPNQQGQPGSRHGNRGRRQA KKAASTDLGAGETVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPRRHPLCCGSGDNT ANPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ
|