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Report for CCDS6303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6303.1 Public Homo sapiens 8 LRP12 24 110 108 CCDS HistoryNCBI Gene:29967Re-query CCDS DB by CCDS ID:6303.1Re-query CCDS DB by GeneID:29967See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276654.10 ENSP00000276654.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276654.10Link to Ensembl Protein Viewer:ENSP00000276654.5Re-query CCDS DB by Nucleotide ID:ENST00000276654Re-query CCDS DB by Protein ID:ENSP00000276654
Original member Current member NCBI NM_013437.5 NP_038465.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013437.5Link to Protein Sequence:NP_038465.1Re-query CCDS DB by Nucleotide ID:NM_013437Re-query CCDS DB by Protein ID:NP_038465Link to BLAST:NP_038465.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038465.1 859 Q9Y561-1 859 100% 0 0

Chromosomal Locations for CCDS 6303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104490673 104491539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104495077 104495209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104496972 104498076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104499317 104499519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104508939 104509074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104531907 104531963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104588819 104588897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGGCCTGTCGCTGGAGCACAAAAGAGTCTCCGCGGTGGAGGTCTGCGTTGCTCTTGCTTTTCCTCGCTG
GGGTGTACGGAAATGGTGCTCTTGCAGAACATTCTGAAAATGTGCATATTTCAGGAGTGTCAACTGCTTG
TGGAGAGACTCCAGAGCAAATACGAGCACCAAGTGGCATAATCACAAGCCCAGGCTGGCCTTCTGAATAT
CCTGCAAAAATCAACTGTAGCTGGTTCATAAGGGCAAACCCAGGCGAAATCATTACTATAAGTTTTCAGG
ATTTTGATATTCAAGGATCCAGAAGGTGCAATTTGGACTGGTTGACAATAGAAACATACAAGAATATTGA
AAGTTACAGAGCTTGTGGTTCCACAATTCCACCTCCGTATATCTCTTCACAAGACCACATCTGGATTAGG
TTTCATTCGGATGACAACATCTCTAGAAAGGGTTTCAGACTGGCATATTTTTCAGGGAAATCTGAGGAAC
CAAATTGTGCTTGTGATCAGTTTCGTTGTGGTAATGGAAAGTGTATACCAGAAGCCTGGAAATGTAATAA
CATGGATGAATGTGGAGATAGTTCCGATGAAGAGATCTGTGCCAAAGAAGCAAATCCTCCAACTGCTGCT
GCTTTTCAACCCTGTGCTTACAACCAGTTCCAGTGTTTATCCCGTTTTACCAAAGTTTACACTTGCCTCC
CCGAATCTTTAAAATGTGATGGGAACATTGACTGCCTTGACCTAGGAGATGAGATAGACTGTGATGTGCC
AACATGTGGGCAATGGCTAAAATATTTTTATGGTACTTTTAATTCTCCCAATTATCCAGACTTTTATCCT
CCTGGAAGCAATTGCACCTGGTTAATAGACACTGGTGATCACCGTAAAGTCATTTTACGCTTCACTGACT
TTAAACTTGATGGTACTGGTTATGGTGATTATGTCAAAATATATGATGGATTAGAGGAGAATCCACACAA
GCTTTTGCGTGTGTTGACAGCTTTTGATTCTCATGCACCTCTTACAGTTGTTTCTTCTTCTGGACAGATA
AGGGTACATTTTTGTGCTGATAAAGTGAATGCTGCAAGGGGATTTAATGCTACTTACCAAGTAGATGGGT
TCTGTTTGCCATGGGAAATACCCTGTGGAGGTAACTGGGGGTGTTATACTGAGCAGCAGCGTTGTGATGG
GTATTGGCATTGCCCAAATGGAAGGGATGAAACCAATTGTACCATGTGCCAGAAGGAAGAATTTCCATGT
TCCCGAAATGGTGTCTGTTATCCTCGTTCTGATCGCTGCAACTACCAGAATCATTGCCCAAATGGCTCAG
ATGAAAAAAACTGCTTTTTTTGCCAACCAGGAAATTTCCATTGTAAAAACAATCGTTGTGTGTTTGAAAG
TTGGGTGTGTGATTCTCAAGATGACTGTGGTGATGGCAGCGATGAAGAAAATTGCCCAGTAATCGTGCCT
ACAAGAGTCATCACTGCTGCCGTCATAGGGAGCCTCATCTGTGGCCTGTTACTCGTCATAGCATTGGGAT
GTACTTGTAAGCTTTATTCTCTGAGAATGTTTGAAAGAAGATCATTTGAAACACAGTTGTCAAGAGTGGA
AGCAGAATTGTTAAGAAGAGAAGCTCCTCCCTCGTATGGACAATTGATTGCTCAGGGTTTAATTCCACCA
GTTGAAGATTTTCCTGTTTGTTCACCTAATCAGGCTTCTGTTTTGGAAAATCTGAGGCTAGCGGTACGAT
CTCAGCTTGGATTTACTTCAGTCAGGCTTCCTATGGCAGGCAGATCAAGCAACATTTGGAACCGTATTTT
TAATTTTGCAAGATCACGTCATTCTGGGTCATTGGCTTTGGTCTCAGCAGATGGAGATGAGGTTGTCCCT
AGTCAGAGTACCAGTAGAGAACCTGAGAGAAATCATACTCACAGAAGTTTGTTTTCCGTGGAGTCTGATG
ATACAGACACAGAAAATGAGAGAAGAGATATGGCAGGAGCATCTGGTGGGGTTGCAGCTCCTTTGCCTCA
AAAAGTCCCTCCCACAACGGCAGTAGAAGCGACAGTAGGAGCATGTGCAAGTTCCTCAACTCAGAGTACC
CGAGGTGGTCATGCAGATAATGGAAGGGATGTGACAAGTGTGGAACCCCCAAGTGTGAGTCCAGCACGTC
ACCAGCTTACAAGTGCACTCAGTCGTATGACTCAGGGGCTACGCTGGGTACGTTTTACATTAGGACGATC
AAGTTCCCTAAGTCAGAACCAGAGTCCTTTGAGACAACTTGATAATGGGGTAAGTGGAAGAGAAGATGAT
GATGATGTTGAAATGCTAATTCCAATTTCTGATGGATCTTCAGACTTTGATGTGAATGACTGCTCCAGAC
CTCTTCTTGATCTTGCCTCAGATCAAGGACAAGGGCTTAGACAACCATATAATGCAACAAATCCTGGAGT
AAGGCCAAGTAATCGAGATGGCCCCTGTGAGCGCTGTGGTATTGTCCACACTGCCCAGATACCAGACACT
TGCTTAGAAGTAACACTGAAAAACGAAACGAGTGATGATGAGGCTTTGTTACTTTGTTAG

Translation (859 aa):
MACRWSTKESPRWRSALLLLFLAGVYGNGALAEHSENVHISGVSTACGETPEQIRAPSGIITSPGWPSEY
PAKINCSWFIRANPGEIITISFQDFDIQGSRRCNLDWLTIETYKNIESYRACGSTIPPPYISSQDHIWIR
FHSDDNISRKGFRLAYFSGKSEEPNCACDQFRCGNGKCIPEAWKCNNMDECGDSSDEEICAKEANPPTAA
AFQPCAYNQFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDVPTCGQWLKYFYGTFNSPNYPDFYP
PGSNCTWLIDTGDHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPHKLLRVLTAFDSHAPLTVVSSSGQI
RVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQQRCDGYWHCPNGRDETNCTMCQKEEFPC
SRNGVCYPRSDRCNYQNHCPNGSDEKNCFFCQPGNFHCKNNRCVFESWVCDSQDDCGDGSDEENCPVIVP
TRVITAAVIGSLICGLLLVIALGCTCKLYSLRMFERRSFETQLSRVEAELLRREAPPSYGQLIAQGLIPP
VEDFPVCSPNQASVLENLRLAVRSQLGFTSVRLPMAGRSSNIWNRIFNFARSRHSGSLALVSADGDEVVP
SQSTSREPERNHTHRSLFSVESDDTDTENERRDMAGASGGVAAPLPQKVPPTTAVEATVGACASSSTQST
RGGHADNGRDVTSVEPPSVSPARHQLTSALSRMTQGLRWVRFTLGRSSSLSQNQSPLRQLDNGVSGREDD
DDVEMLIPISDGSSDFDVNDCSRPLLDLASDQGQGLRQPYNATNPGVRPSNRDGPCERCGIVHTAQIPDT
CLEVTLKNETSDDEALLLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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