NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS63678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63678.1 Public Homo sapiens 3 PSMD6 24 110 108 CCDS HistoryNCBI Gene:9861Re-query CCDS DB by CCDS ID:63678.1Re-query CCDS DB by GeneID:9861See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000482510.5 ENSP00000419227.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482510.5Link to Ensembl Protein Viewer:ENSP00000419227.1Re-query CCDS DB by Nucleotide ID:ENST00000482510Re-query CCDS DB by Protein ID:ENSP00000419227
Original member Current member NCBI NM_001271781.2 NP_001258710.1 Accepted alive Link to Nucleotide Sequence:NM_001271781.2Link to Protein Sequence:NP_001258710.1Re-query CCDS DB by Nucleotide ID:NM_001271781Re-query CCDS DB by Protein ID:NP_001258710Link to BLAST:NP_001258710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258710.1 350 Q15008-3 350 100% 0 0

Chromosomal Locations for CCDS 63678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 64010668 64010764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64010878 64010955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64013439 64013607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64018599 64018707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64018818 64019037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64019296 64019441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64022318 64022523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 64023392 64023419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCCGCTGGAGAACCTGGAGGAGGAGGACATGGCTCCTTACTATGAAGCCTTGTGCAAATCCCTCGACT
GGCAGATAGACGTGGACCTACTCAATAAAATGAAGAAGGCAAATGAAGATGAGTTGAAGCGTTTGGATGA
GGAGCTGGAAGATGCAGAGAAGAATCTAGGAGAGAGCGAAATTCGCGATGCAATGATGGCAAAGGCCGAG
TACCTCTGCCGGATAGGTGACAAAGAGGGAGCTCTGACAGCCTTTCGCAAGACATATGACAAAACTGTGG
CCCTGGGTCACCGATTGGATATTGTATTCTATCTCCTTAGGATTGGCTTATTTTATATGGATAATGATCT
CATCACACGAAACACAGAAAAGGCCAAAAGCTTAATAGAAGAAGGAGGAGACTGGGACAGGAGAAACCGC
CTAAAAGTGTATCAGGGTCTTTATTGTGTGGCTATTCGTGATTTCAAACAGGCAGCTGAACTCTTCCTTG
ACACTGTTTCAACATTTACATCCTATGAACTCATGGATTATAAAACATTTGTGACTTATACTGTCTATGT
CAGTATGATTGCCTTAGAAAGACCAGATCTCAGGGAAAAGGTCATTAAAGGAGCAGAGATTCTTGAAGTG
TTGCACAGTCTTCCAGCAGTTCGGCAGTATCTGTTTTCACTCTATGAATGCCGTTACTCTGTTTTCTTCC
AATCATTAGCGGTTGTGGAACAGGAAATGAAAAAGGACTGGCTTTTTGCCCCTCATTATCGATACTATGT
AAGAGAAATGAGAATTCATGCATACAGTCAGCTGCTGGAATCATATAGGTCATTAACCCTTGGCTATATG
GCAGAAGCGTTTGGTGTTGGTGTGGAATTCATTGATCAGGAACTGTCCAGGTTTATTGCTGCCGGGAGAC
TACACTGCAAAATAGATAAAGTGAATGAAATAGTAGAAACCAACAGACCTGATAGCAAGAACTGGCAGTA
CCAAGAAACTATCAAGAAAGGAGATCTGCTACTAAACAGAGTTCAAAAACTTTCCAGAGTAATTAATATG
TAA

Translation (350 aa):
MPLENLEEEDMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAE
YLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNR
LKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEV
LHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYM
AEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH