NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6436.1 Public Homo sapiens 8 COMMD5 24 110 108 CCDS HistoryNCBI Gene:28991Re-query CCDS DB by CCDS ID:6436.1Re-query CCDS DB by GeneID:28991See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000305103.4 ENSP00000304544.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000305103.4Link to Ensembl Protein Viewer:ENSP00000304544.3Re-query CCDS DB by Nucleotide ID:ENST00000305103Re-query CCDS DB by Protein ID:ENSP00000304544
Original member Current member EBI ENST00000402718.4 ENSP00000385793.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402718.4Link to Ensembl Protein Viewer:ENSP00000385793.3Re-query CCDS DB by Nucleotide ID:ENST00000402718Re-query CCDS DB by Protein ID:ENSP00000385793
Original member Current member EBI ENST00000450361.2 ENSP00000394331.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450361.2Link to Ensembl Protein Viewer:ENSP00000394331.2Re-query CCDS DB by Nucleotide ID:ENST00000450361Re-query CCDS DB by Protein ID:ENSP00000394331
Original member Current member EBI ENST00000543949.2 ENSP00000445840.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543949.2Link to Ensembl Protein Viewer:ENSP00000445840.2Re-query CCDS DB by Nucleotide ID:ENST00000543949Re-query CCDS DB by Protein ID:ENSP00000445840
Original member Current member NCBI NM_001081003.3 NP_001074472.1 Accepted alive Link to Nucleotide Sequence:NM_001081003.3Link to Protein Sequence:NP_001074472.1Re-query CCDS DB by Nucleotide ID:NM_001081003Re-query CCDS DB by Protein ID:NP_001074472Link to BLAST:NP_001074472.1
Original member Current member NCBI NM_001081004.3 NP_001074473.1 Accepted alive Link to Nucleotide Sequence:NM_001081004.3Link to Protein Sequence:NP_001074473.1Re-query CCDS DB by Nucleotide ID:NM_001081004Re-query CCDS DB by Protein ID:NP_001074473Link to BLAST:NP_001074473.1
Original member Current member NCBI NM_001287237.2 NP_001274166.1 Accepted alive Link to Nucleotide Sequence:NM_001287237.2Link to Protein Sequence:NP_001274166.1Re-query CCDS DB by Nucleotide ID:NM_001287237Re-query CCDS DB by Protein ID:NP_001274166Link to BLAST:NP_001274166.1
Original member Current member NCBI NM_014066.4 NP_054785.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014066.4Link to Protein Sequence:NP_054785.2Re-query CCDS DB by Nucleotide ID:NM_014066Re-query CCDS DB by Protein ID:NP_054785Link to BLAST:NP_054785.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074472.1 224 Q9GZQ3 224 100% 0 0
NP_001074473.1 224 Q9GZQ3 224 100% 0 0
NP_001274166.1 224 Q9GZQ3 224 100% 0 0
NP_054785.2 224 Q9GZQ3 224 100% 0 0

Chromosomal Locations for CCDS 6436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144850664 144851338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGTCTGCTGTGGGGGCTGCAACTCCATACCTGCATCATCCTGGTGATAGTCACAGTGGCCGAGTGAGTT
TCTTGGGGGCCCAGCTTCCTCCAGAGGTGGCAGCAATGGCCCGGCTACTAGGGGACCTAGACAGGAGCAC
GTTCAGAAAGTTGCTGAAGTTTGTGGTCAGCAGCCTGCAGGGGGAGGACTGCCGAGAGGCTGTGCAGCGT
CTTGGGGTCAGCGCCAACCTGCCGGAGGAGCAGCTGGGTGCCCTGCTGGCAGGCATGCACACACTGCTCC
AGCAGGCCCTCCGTCTGCCCCCCACCAGCCTGAAGCCTGACACCTTCAGGGACCAGCTCCAGGAGCTCTG
CATCCCCCAAGACCTGGTCGGGGACTTGGCCAGCGTGGTATTTGGGAGCCAGCGGCCCCTCCTTGATTCT
GTGGCCCAGCAGCAGGGGGCCTGGCTGCCGCATGTTGCTGACTTTCGGTGGCGGGTGGATGTAGCAATCT
CCACCAGTGCCCTGGCTCGCTCCCTGCAGCCGAGCGTCCTGATGCAGCTGAAGCTTTCAGATGGGTCAGC
ATACCGCTTTGAGGTCCCCACAGCCAAGTTCCAGGAGCTGCGGTACAGCGTGGCCCTGGTCCTAAAGGAG
ATGGCAGATCTGGAGAAGAGGTGTGAGCGCAGACTGCAGGACTGA

Translation (224 aa):
MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDCREAVQR
LGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDS
VAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKFQELRYSVALVLKE
MADLEKRCERRLQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH