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Report for CCDS6477.3 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6477.3 |
Public |
Homo sapiens |
9 |
TTC39B |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:158219](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:6477.3](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:158219](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 6477.1 |
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 6477.3
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000512701.7 |
ENSP00000422496.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000512701.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000422496.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000512701](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000422496](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_152574.3 |
NP_689787.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_152574.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_689787.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_152574](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_689787](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_689787.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 6477.3
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1851 nt): ATGGCGCTCTTAGGCAGCCGAGCGGAGCTGGAAGCGGACGAGGACGTTTTCGAAGATGCCTTGGAAACCA TCTCAATATCTTCTCACTCAGATATGGCAACAAGCAGCCTTCACTTTGCATCATGTGATACACAACAGGC GCCCAGACAGCGCGGAGCGTCTACTGTCAGCAGTTCATCATCAACCAAGGTGGATCTCAAGAGTGGCCTC GAAGAATGTGCTGTGGCATTGAACTTATTTCTAAGCAACAAATTTACAGACGCCTTAGAATTGCTTCGCC CCTGGGCTAAGGAGAGTATGTACCATGCCTTGGGCTACAGTACCATTGTGGTGTTGCAGGCTGTCCTGAC CTTCGAGCAACAGGACATCCAGAACGGCATTTCTGCCATGAAGGACGCTTTACAAACCTGCCAAAAATAC AGGAAAAAATACACAGTTGTAGAATCTTTCTCAAGTCTTCTTTCTAGAGGATCCCTGGAGCAACTGAGTG AAGAGGAAATGCATGCTGAAATCTGTTATGCCGAGTGTCTCCTACAGAAAGCTGCACTCACGTTTGTGCA GGATGAAAATATGATCAACTTCATCAAAGGTGGACTCAAAATTAGAACAAGTTACCAAATATATAAAGAA TGTCTTTCTATCCTGCATGAAATTCAGAAGAACAAACTTCAGCAGGAATTCTTCTATGAGTTTGAAGGGG GTGTCAAGCTTGGCAGTGGGGCCTTTAATTTGATGCTGTCCCTTTTACCAGCAAGGATTATCAGACTACT AGAATTTATTGGATTTTCTGGGAATAGGGAGTTGGGCCTCCTGCAGTTACGTGAAGGTGCTTCAGGAAGG AGCATGAGGTCTGCACTGTGCTGCTTAACCATCTTAGCTTTTCATACTTACATCTCCCTAATACTTGGTA CAGGAGAAGTGAATGTTGCGGAAGCAGAGCGTCTCCTGGCACCCTTCCTCCAGCAGTTTCCAAATGGCTC ACTCGTGTTGTTTTATCATGCCCGAATAGAGTTGCTGAAAGGGAATCTTGAAGAGGCACAAGAAGTATTT CAAAAATGCATTTCAGTTCAAGAAGAATGGAAACAGTTTCACCATCTCTGCTACTGGGAGCTAATGTGGA TTAATGTTTTCCAACAAAACTGGATGCAGGCATATTACTATTCAGATCTGCTTTGCAAAGAGAGTAAATG GTCCAAGGCAACTTATGTGTTCTTGAAAGCAGCAATTTTGAGTATGCTTCCAGAGGAGGATGTAGTAGCA ACGAATGAGAATGTGGTAACTTTATTCAGACAGGTGGACAGCTTGAAGCAGAGAATTGCCGGGAAATCTA TCCCTACTGAGAAGTTTGCTGTGAGGAAGGCTCGGCGTTACTCCGCCTCCTTACCTGCACCTGTGAAGCT CATCTTACCTGCCCTGGAAATGATGTATGTCTGGAATGGTTTTTCAATAGTGAGCAAAAGAAAAGACCTT TCTGAAAATCTGTTAGTAACTGTTGAAAAAGCTGAGGCAGCTTTACAAAGTCAAAATTTTAACAGCTTCT CTGTGGATGATGAGTGCTTAGTGAAGTTACTTAAAGGATGTTGCCTCAAGAACTTACAGCGGCCCTTGCA AGCTGAACTATGTTACAATCATGTTGTGGAAAGTGAAAAGCTACTGAAGTATGACCACTACCTAGTGCCG TTCACTCTATTTGAATTGGCATCTTTGTATAAAAGCCAGGGGGAAATTGACAAGGCCATAAAGTTCCTAG AAACTGCAAGGAACAACTACAAAGATTACTCCCTGGAGTCCAGACTACACTTCAGAATTCAGGCAGCTCT TCACCTCTGGAGAAAACCTTCCTCAGATTGA
Translation (616 aa): MALLGSRAELEADEDVFEDALETISISSHSDMATSSLHFASCDTQQAPRQRGASTVSSSSSTKVDLKSGL EECAVALNLFLSNKFTDALELLRPWAKESMYHALGYSTIVVLQAVLTFEQQDIQNGISAMKDALQTCQKY RKKYTVVESFSSLLSRGSLEQLSEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKE CLSILHEIQKNKLQQEFFYEFEGGVKLGSGAFNLMLSLLPARIIRLLEFIGFSGNRELGLLQLREGASGR SMRSALCCLTILAFHTYISLILGTGEVNVAEAERLLAPFLQQFPNGSLVLFYHARIELLKGNLEEAQEVF QKCISVQEEWKQFHHLCYWELMWINVFQQNWMQAYYYSDLLCKESKWSKATYVFLKAAILSMLPEEDVVA TNENVVTLFRQVDSLKQRIAGKSIPTEKFAVRKARRYSASLPAPVKLILPALEMMYVWNGFSIVSKRKDL SENLLVTVEKAEAALQSQNFNSFSVDDECLVKLLKGCCLKNLQRPLQAELCYNHVVESEKLLKYDHYLVP FTLFELASLYKSQGEIDKAIKFLETARNNYKDYSLESRLHFRIQAALHLWRKPSSD
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