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Report for CCDS64890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64890.1 Public Homo sapiens 8 SPIDR 24 110 108 CCDS HistoryNCBI Gene:23514Re-query CCDS DB by CCDS ID:64890.1Re-query CCDS DB by GeneID:23514See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000518074.5 ENSP00000429487.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518074.5Link to Ensembl Protein Viewer:ENSP00000429487.1Re-query CCDS DB by Nucleotide ID:ENST00000518074Re-query CCDS DB by Protein ID:ENSP00000429487
Original member Current member NCBI NM_001282919.1 NP_001269848.1 Accepted alive Link to Nucleotide Sequence:NM_001282919.1Link to Protein Sequence:NP_001269848.1Re-query CCDS DB by Nucleotide ID:NM_001282919Re-query CCDS DB by Protein ID:NP_001269848Link to BLAST:NP_001269848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269848.1 876 Q14159-3 876 100% 0 0

Chromosomal Locations for CCDS 64890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 47279972 47279980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47284028 47284094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47291033 47291137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47293867 47294030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47396376 47396626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47407861 47407961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47440323 47440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47595811 47596006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47598946 47599196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47673801 47673941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47700403 47700490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701721 47701864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47701956 47702015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47712662 47712872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47713489 47713641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47727200 47727293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47728933 47729102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 47735307 47735512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGCTCAGTCATTAACAGCTGAAGAGAAGACGATTACAGAAAAGCACCTTGAATTATGCCCTAGACCCA
AGCAAGAAACCACCACATCTAAAAGCACCAGTGGGCTTACAGACATAACATGGAGCTCCAGTGGAAGTGA
TTTGTCGGATGAAGATAAGACACTTTCTCAGTTACAGAGAGATGAATTACAGTTTATCGACTGGGAGATT
GACAGTGACAGGGCAGAGGCTAGTGACTGTGATGAATTTGAAGATGACGAGGGTGCTGTGGAAATCTCAG
ACTGTGCTTCTTGTGCAAGTAATCAGTCTTTGACAAGTGATGAGAAGCTGTCGGAGCTTCCCAAGCCAAG
TTCTATAGAAATTTTAGAGTATTCATCAGATAGTGAAAAAGAAGATGATTTGGAAAATGTCCTACTCATT
GATTCAGAATCCCCTCACAAATACCACGTGCAGTTTGCATCGGATGCAAGACAGATTATGGAGAGACTGA
TAGATCCAAGGACAAAATCAACAGAGACCATTTTGCATACACCTCAGAAACCCACAGCTAAGTTTCCCAG
GACTCCAGAAAATTCAGCAAAGAAGAAGCTTTTAAGAGGTGGACTAGCAGAAAGACTAAATGGACTGCAG
AATCGAGAGAGATCTGCTATTTCTTTGTGGAGACATCAATGTATTTCTTACCAAAAGACACTTTCAGGTA
GAAAATCTGGTGTATTAACTGTGAAAATTTTAGAGCTGCATGAGGAATGTGCCATGCAAGTTGCCATGTG
TGAGCAGTTATTGGGGTCACCAGCCACCAGCTCCTCCCAAAGTGTGGCTCCCAGGCCTGGAGCTGGCCTG
AAAGTTCTCTTCACCAAGGAGACTGCAGGCTACCTCAGGGGCCGTCCCCAGGACACTGTCCGGATCTTCC
CTCCCTGGCAAAAACTGATTATTCCAAGTGGAAGTTGCCCTGTTATTCTGAATACTTACTTTTGTGAGAA
AGTTGTTGCCAAAGAAGATTCAGAAAAAACTTGTGAAGTGTACTGTCCGGACATACCCCTTCCAAGAAGA
AGCATCTCTTTGGCCCAGATGTTTGTAATTAAGGGTCTAACAAATAATTCACCTGAAATCCAGGTTGTGT
GTAGTGGTGTAGCCACTACAGGGACAGCCTGGACCCATGGGCACAAAGAAGCAAAACAGCGCATCCCAAC
CAGCACTCCCCTGAGGGATTCTCTCCTGGATGTGGTGGAAAGCCAGGGAGCTGCCTCGTGGCCAGGAGCT
GGAGTCCGAGTGGTGGTGCAAAGAGTGTATTCTCTTCCCAGCAGAGACAGCACCAGGGGTCAGCAGGGGG
CCAGCTCAGGACACACAGACCCAGCTGGAACTCGAGCCTGCCTTCTGGTACAAGATGCCTGTGGAATGTT
CGGTGAAGTGCACTTGGAGTTCACCATGTCGAAGGCAAGACAGTTGGAAGGGAAGTCTTGCAGCCTGGTG
GGAATGAAGGTTCTACAGAAAGTCACCAGAGGAAGGACAGCGGGGATTTTCAGTTTGATTGACACCCTGT
GGCCCCCAGCGATACCTCTGAAAACACCTGGCCGCGACCAGCCCTGTGAAGAGATAAAAACTCATCTGCC
TCCTCCAGCCTTGTGTTACATCCTCACAGCTCATCCAAATCTGGGACAAATTGATATAATTGACGAAGAC
CCCATTTATAAGCTTTACCAGCCTCCAGTTACCCGCTGCTTAAGAGACATTCTCCAGATGAATGATCTTG
GTACCCGTTGCAGTTTCTATGCCACGGTGATTTACCAAAAACCACAGCTGAAGAGTCTGCTGCTTCTGGA
GCAAAGGGAGATCTGGCTGCTAGTGACCGATGTCACTCTGCAAACGAAGGAGGAGAGAGACCCCAGGCTC
CCCAAAACCCTGCTGGTCTATGTGGCCCCCTTGTGTGTGCTGGGCTCTGAAGTCCTGGAGGCACTCGCTG
GGGCTGCCCCTCACAGCCTCTTCTTCAAGGACGCTCTCCGTGACCAGGGTCGGATTGTTTGTGCTGAACG
AACTGTCCTCTTGCTTCAGAAGCCCCTTTTGAGTGTGGTCTCTGGTGCAAGTTCCTGTGAGCTGCCTGGC
CCGGTGATGCTCGACAGCCTGGACTCTGCAACACCTGTCAACTCCATCTGCAGTGTTCAAGGCACTGTGG
TTGGCGTGGACGAGAGCACTGCTTTCTCATGGCCTGTGTGTGACATGTGTGGCAACGGGAGATTGGAACA
GAGGCCGGAAGACAGAGGCGCCTTTTCCTGTGGGGACTGCTCCCGGGTGGTCACATCTCCTGTTCTCAAG
AGGCACCTGCAGGTCTTCCTGGACTGCCGCTCAAGACCGCAGTGCAGAGTGAAGGTCAAGGTAGGAGCCA
GGCCAGAGCACGCACGCACTCCTAGCTCACTCCAACATAGCGAAGAGCTACGAAGTGAAGAGTGTCCTCG
GAAAGGAAGTGGGGTTGTTAAATTGTTTTGTCCAGTCCGTAACCGCCCACCCGACCAGCTGCATTGGATT
GGAGGAAATCGAGCTTCTGAGTGCAGGAGGGGCCTCTGCAGAACACTAGCGGTTGCCGCAGGATCTGTGA
ACTTTGCAATGTGGCTGCAAGGGTGGTGGTGGTGGTGGTGA

Translation (876 aa):
MAQSLTAEEKTITEKHLELCPRPKQETTTSKSTSGLTDITWSSSGSDLSDEDKTLSQLQRDELQFIDWEI
DSDRAEASDCDEFEDDEGAVEISDCASCASNQSLTSDEKLSELPKPSSIEILEYSSDSEKEDDLENVLLI
DSESPHKYHVQFASDARQIMERLIDPRTKSTETILHTPQKPTAKFPRTPENSAKKKLLRGGLAERLNGLQ
NRERSAISLWRHQCISYQKTLSGRKSGVLTVKILELHEECAMQVAMCEQLLGSPATSSSQSVAPRPGAGL
KVLFTKETAGYLRGRPQDTVRIFPPWQKLIIPSGSCPVILNTYFCEKVVAKEDSEKTCEVYCPDIPLPRR
SISLAQMFVIKGLTNNSPEIQVVCSGVATTGTAWTHGHKEAKQRIPTSTPLRDSLLDVVESQGAASWPGA
GVRVVVQRVYSLPSRDSTRGQQGASSGHTDPAGTRACLLVQDACGMFGEVHLEFTMSKARQLEGKSCSLV
GMKVLQKVTRGRTAGIFSLIDTLWPPAIPLKTPGRDQPCEEIKTHLPPPALCYILTAHPNLGQIDIIDED
PIYKLYQPPVTRCLRDILQMNDLGTRCSFYATVIYQKPQLKSLLLLEQREIWLLVTDVTLQTKEERDPRL
PKTLLVYVAPLCVLGSEVLEALAGAAPHSLFFKDALRDQGRIVCAERTVLLLQKPLLSVVSGASSCELPG
PVMLDSLDSATPVNSICSVQGTVVGVDESTAFSWPVCDMCGNGRLEQRPEDRGAFSCGDCSRVVTSPVLK
RHLQVFLDCRSRPQCRVKVKVGARPEHARTPSSLQHSEELRSEECPRKGSGVVKLFCPVRNRPPDQLHWI
GGNRASECRRGLCRTLAVAAGSVNFAMWLQGWWWWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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