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Report for CCDS64978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64978.1 Public Homo sapiens 8 SLA 24 110 108 CCDS HistoryNCBI Gene:6503Re-query CCDS DB by CCDS ID:64978.1Re-query CCDS DB by GeneID:6503See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64978.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517648.5 ENSP00000428559.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517648.5Link to Ensembl Protein Viewer:ENSP00000428559.1Re-query CCDS DB by Nucleotide ID:ENST00000517648Re-query CCDS DB by Protein ID:ENSP00000428559
Original member Current member NCBI NM_001282964.2 NP_001269893.1 Accepted alive Link to Nucleotide Sequence:NM_001282964.2Link to Protein Sequence:NP_001269893.1Re-query CCDS DB by Nucleotide ID:NM_001282964Re-query CCDS DB by Protein ID:NP_001269893Link to BLAST:NP_001269893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269893.1 249 Q13239-4 249 100% 0 0

Chromosomal Locations for CCDS 64978.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 133038524 133038737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133039998 133040130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133047830 133047933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133049902 133049988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133050816 133050915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133060100 133060200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 133102553 133102563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGCTCCACCGGCTCTGGGCATCACCAGCGGCCCCAGGGAAAAAGAAAGAAATGGGAAACAGCATGAAAT
CCACCCCTGCGCCTGCCGAGAGGCCCCTGCCCAACCCGGAGGGACTGGATAGCGACTTCCTTGCCGTGCT
AAGTGACTACCCGTCTCCTGACATCAGCCCCCCGATATTCCGCCGAGGGGAGAAACTGCGTGTGATTTCT
GATGAAGGGGGCTGGTGGAAAGCTATTTCTCTTAGCACTGGTCGAGAGAGTTACATCCCTGGAATATGTG
TGGCCAGAGTTTACCATGGCTGGCTGTTTGAGGGCCTGGGCAGAGACAAGGCCGAGGAGCTGCTGCAGCT
GCCAGACACAAAGGTCGGCTCCTTCATGATCAGAGAGAGTGAGACCAAGAAAGAGGTGGCTGATGGCCTG
TGCTGTGTGCTCACCACGCCCTGCCTGACACAAAGCACGGCTGCCCCAGCAGTGAGGGCCTCCAGCTCAC
CTGTCACCTTGCGTCAGAAGACTGTGGACTGGAGGAGAGTGTCCAGACTGCAGGAGGACCCCGAGGGAAC
AGAGAACCCGCTTGGGGTAGACGAGTCCCTTTTCAGCTATGGCCTTCGAGAGAGCATTGCCTCTTACCTG
TCCCTGACCAGTGAGGACAACACCTCCTTTGATCGAAAGAAGAAAAGCATCTCCCTGATGTATGGTGGCA
GCAAGAGAAAGAGCTCATTCTTCTCATCACCACCTTACTTTGAGGACTAG

Translation (249 aa):
MLHRLWASPAAPGKKKEMGNSMKSTPAPAERPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVIS
DEGGWWKAISLSTGRESYIPGICVARVYHGWLFEGLGRDKAEELLQLPDTKVGSFMIRESETKKEVADGL
CCVLTTPCLTQSTAAPAVRASSSPVTLRQKTVDWRRVSRLQEDPEGTENPLGVDESLFSYGLRESIASYL
SLTSEDNTSFDRKKKSISLMYGGSKRKSSFFSSPPYFED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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