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Report for CCDS6547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6547.1 Public Homo sapiens 9 UBAP2 24 110 108 CCDS HistoryNCBI Gene:55833Re-query CCDS DB by CCDS ID:6547.1Re-query CCDS DB by GeneID:55833See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6547.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379238.7 ENSP00000368540.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379238.7Link to Ensembl Protein Viewer:ENSP00000368540.2Re-query CCDS DB by Nucleotide ID:ENST00000379238Re-query CCDS DB by Protein ID:ENSP00000368540
Original member Current member EBI ENST00000682239.1 ENSP00000507293.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682239.1Link to Ensembl Protein Viewer:ENSP00000507293.1Re-query CCDS DB by Nucleotide ID:ENST00000682239Re-query CCDS DB by Protein ID:ENSP00000507293
Original member Current member EBI ENST00000684158.1 ENSP00000508372.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684158.1Link to Ensembl Protein Viewer:ENSP00000508372.1Re-query CCDS DB by Nucleotide ID:ENST00000684158Re-query CCDS DB by Protein ID:ENSP00000508372
Original member Current member NCBI NM_001370059.2 NP_001356988.2 Accepted alive Link to Nucleotide Sequence:NM_001370059.2Link to Protein Sequence:NP_001356988.2Re-query CCDS DB by Nucleotide ID:NM_001370059Re-query CCDS DB by Protein ID:NP_001356988Link to BLAST:NP_001356988.2
Original member Current member NCBI NM_001370062.2 NP_001356991.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370062.2Link to Protein Sequence:NP_001356991.2Re-query CCDS DB by Nucleotide ID:NM_001370062Re-query CCDS DB by Protein ID:NP_001356991Link to BLAST:NP_001356991.2
Original member Current member NCBI NM_018449.4 NP_060919.4 Accepted alive Link to Nucleotide Sequence:NM_018449.4Link to Protein Sequence:NP_060919.4Re-query CCDS DB by Nucleotide ID:NM_018449Re-query CCDS DB by Protein ID:NP_060919Link to BLAST:NP_060919.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356988.2 1119 Q5T6F2-1 1119 100% 0 0
NP_001356991.2 1119 Q5T6F2-1 1119 100% 0 0
NP_060919.4 1119 Q5T6F2-1 1119 100% 0 0

Chromosomal Locations for CCDS 6547.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 33922504 33922599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33922687 33922878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33922966 33923033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33923186 33923293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33923379 33923478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33923795 33924000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33924206 33924284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33926617 33926664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33926989 33927080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33927797 33927992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33932562 33932628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33933490 33933628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33935839 33935878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33941649 33941862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33943420 33943589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33944365 33944639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33948374 33948587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33953285 33953474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33956079 33956146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33960826 33960878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33963726 33963791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33971651 33971754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33973183 33973237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33986760 33986837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33988973 33989126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33996223 33996333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 33998787 33998864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34017050 34017148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3360 nt):
ATGATGACTTCAGTGAGCAGTGACCATTGTCGAGGTGCTCGGGAAAAACCACAGATTTCAGCAGCACAAT
CAACGCAACCACAGAAACAAGTGGTACAGGCAACAGCTGAACAGATGCGTCTCGCTCAAGTGATCTTTGA
TAAGAATGATTCAGATTTTGAAGCTAAAGTTAAGCAGCTTATGGAAGTGACAGGGAAAAATCAGGATGAA
TGCATAGTGGCCCTACATGATTGTAATGGAGATGTGAACAAAGCTATCAATATATTGCTGGAAGGGAATT
CAGACACAACTTCATGGGAGACTGTAGGGTGTAAGAAAAAGAATTTTGCAAAAGAAAATTCAGAAAACAA
AGAGAATAGAGAGAAGAAAAGCGAGAAAGAATCGAGTCGTGGACGTGGAAACAACAACCGGAAAGGAAGA
GGCGGCAATCGTGGCAGAGAATTTAGAGGTGAAGAAAATGGAATTGATTGCAATCAAGTGGACAAACCTT
CAGATCGTGGCAAGCGAGCCCGGGGTAGAGGATTTGGACGTGGCAGAGGGAGAGGGGCAGGAAGGTTCTC
AACCCAAGGCATGGGGACATTTAATCCTGCAGACTATTCAGATTCTACATCTACAGATGTGTGTGGGACA
AAGCTAGTAGTTTGGGAAGCTGCTCAGAATGGTGCAGATGAGGGAACTGAACTGGCATCAAATACTCACA
ACATAGCTCAGGATCTGTCAAACAAAAGTTCTTATGGACTCAAAGGGGCTTGGAAGAATTCTGTGGAAGA
GTGGACAACAGAAGACTGGACTGAAGATCTTTCTGAAACAAAGGTCTTCACTGCCTCATCTGCTCCAGCA
GAGAATCACATCTTACCTGGGCAAAGCATTGATCTGGTAGCCTTGCTCCAGAAGCCTGTTCCTCACAGTC
AAGCCTCAGAAGCCAACTCCTTTGAAACTTCCCAACAGCAGGGCTTTGGCCAAGCCCTTGTCTTCACAAA
TTCGCAACACAACAATCAGATGGCACCAGGGACTGGCAGCTCCACTGCCGTCAACTCCTGTTCTCCTCAG
AGCCTGTCATCCGTCCTTGGCTCAGGATTTGGAGAGCTTGCACCACCAAAAATGGCAAACATCACCAGCT
CCCAGATTTTGGACCAGTTGAAAGCTCCGAGTTTGGGCCAGTTTACCACCACCCCAAGTACACAGCAGAA
TAGTACAAGTCACCCTACAACTACTACTTCTTGGGACCTCAAGCCCCCAACATCCCAGTCCTCAGTCCTC
AGTCATCTTGACTTCAAATCTCAACCTGAGCCATCCCCAGTTCTTAGCCAGTTGAGCCAGCGACAACAGC
ACCAGAGCCAGGCAGTCACTGTTCCTCCTCCTGGTTTGGAGTCCTTTCCTTCCCAGGCAAAACTTCGAGA
ATCAACACCTGGAGACAGTCCCTCCACTGTGAACAAGCTTTTGCAGCTTCCCAGCACGACCATTGAAAAT
ATCTCTGTGTCTGTCCACCAGCCACAGCCCAAACACATCAAACTTGCTAAGCGGCGGATACCCCCAGCTT
CTAAGATCCCAGCTTCTGCAGTGGAAATGCCTGGTTCAGCAGATGTCACAGGATTAAATGTGCAGTTTGG
GGCTCTGGAATTTGGGTCAGAACCTTCTCTCTCTGAATTTGGATCAGCTCCAAGCAGTGAAAATAGTAAT
CAGATTCCCATCAGCTTGTATTCGAAGTCTTTAAGTGAGCCTTTGAATACATCTTTATCAATGACCAGTG
CAGTACAGAACTCCACATATACAACTTCCGTCATTACCTCCTGCAGTCTGACAAGCTCATCACTGAATTC
TGCTAGTCCAGTAGCAATGTCTTCCTCTTATGACCAGAGTTCTGTGCATAACAGGATCCCATACCAAAGC
CCTGTGAGTTCATCAGAGTCAGCTCCAGGAACCATCATGAATGGACATGGTGGTGGTCGAAGTCAGCAGA
CACTAGACACTCCAAAGACAACAGGCCCTCCCTCTGCCCTCCCGTCTGTGAGCTCCCTGCCCAGCACCAC
CTCCTGCACTGCACTTCTGCCGTCCACATCCCAGCACACTGGCGACCTGACTAGCAGCCCTCTCTCTCAG
CTTAGCAGTTCGCTCTCCAGCCACCAGAGCAGCCTCTCTGCACATGCAGCCCTCTCCTCGAGCACGTCAC
ACACACATGCCAGTGTGGAGAGCGCCTCTTCCCACCAGTCCTCAGCCACCTTCTCCACGGCAGCGACCTC
CGTCTCAAGTTCCGCATCCTCAGGCGCCAGCCTGTCCAGTAGCATGAACACCGCGAACAGCCTCTGTCTG
GGTGGGACCCCCGCGAGTGCATCCAGCAGCAGTAGCAGGGCCGCGCCCTTGGTGACCTCAGGCAAAGCAC
CCCCAAACTTACCTCAGGGGGTGCCTCCCCTGCTGCACAACCAGTACCTCGTAGGTCCCGGAGGACTGCT
TCCTGCCTACCCGATCTATGGCTATGACGAGCTCCAGATGCTGCAGTCACGGCTGCCAGTGGACTACTAT
GGAATTCCCTTTGCTGCACCCACAGCGCTTGCCAGCCGAGATGGGAGCCTAGCTAATAATCCATATCCAG
GTGATGTCACAAAGTTTGGCCGTGGGGACTCTGCATCCCCTGCACCCGCTACCACACCAGCTCAGCCACA
GCAGAGCCAATCACAGACCCACCACACAGCCCAGCAGCCCTTCGTGAATCCTGCACTGCCACCTGGCTAT
AGCTACACTGGTCTTCCCTACTACACAGGCATGCCCAGTGCCTTCCAGTATGGCCCCACCATGTTTGTCC
CTCCAGCCTCAGCCAAGCAACATGGGGTGAACCTCAGCACTCCCACACCTCCCTTCCAGCAGGCCAGTGG
TTATGGCCAGCACGGCTACAGTACAGGTTATGACGACCTGACCCAGGGGACAGCAGCAGGAGACTACTCC
AAAGGTGGCTATGCTGGATCATCGCAGGCACCAAACAAGTCTGCAGGTTCTGGGCCTGGCAAAGGAGTAT
CAGTGTCTTCAAGCACCACTGGTCTACCTGATATGACTGGTTCTGTCTACAATAAGACACAGACTTTTGA
CAAGCAGGGATTTCATGCAGGGACGCCTCCACCTTTCAGCCTGCCCTCGGTCTTGGGCTCCACTGGGCCC
CTGGCCTCGGGAGCGGCCCCTGGCTATGCACCCCCACCATTCCTACACATCTTGCCAGCCCACCAGCAGC
CCCACTCACAGCTGCTGCACCACCACCTTCCGCAGGATGCACAGAGTGGCTCGGGTCAGCGCAGCCAGCC
CAGCTCCCTGCAGCCCAAGTCTCAAGCCTCCAAACCTGCCTACGGCAACTCTCCATACTGGACAAACTAA

Translation (1119 aa):
MMTSVSSDHCRGAREKPQISAAQSTQPQKQVVQATAEQMRLAQVIFDKNDSDFEAKVKQLMEVTGKNQDE
CIVALHDCNGDVNKAINILLEGNSDTTSWETVGCKKKNFAKENSENKENREKKSEKESSRGRGNNNRKGR
GGNRGREFRGEENGIDCNQVDKPSDRGKRARGRGFGRGRGRGAGRFSTQGMGTFNPADYSDSTSTDVCGT
KLVVWEAAQNGADEGTELASNTHNIAQDLSNKSSYGLKGAWKNSVEEWTTEDWTEDLSETKVFTASSAPA
ENHILPGQSIDLVALLQKPVPHSQASEANSFETSQQQGFGQALVFTNSQHNNQMAPGTGSSTAVNSCSPQ
SLSSVLGSGFGELAPPKMANITSSQILDQLKAPSLGQFTTTPSTQQNSTSHPTTTTSWDLKPPTSQSSVL
SHLDFKSQPEPSPVLSQLSQRQQHQSQAVTVPPPGLESFPSQAKLRESTPGDSPSTVNKLLQLPSTTIEN
ISVSVHQPQPKHIKLAKRRIPPASKIPASAVEMPGSADVTGLNVQFGALEFGSEPSLSEFGSAPSSENSN
QIPISLYSKSLSEPLNTSLSMTSAVQNSTYTTSVITSCSLTSSSLNSASPVAMSSSYDQSSVHNRIPYQS
PVSSSESAPGTIMNGHGGGRSQQTLDTPKTTGPPSALPSVSSLPSTTSCTALLPSTSQHTGDLTSSPLSQ
LSSSLSSHQSSLSAHAALSSSTSHTHASVESASSHQSSATFSTAATSVSSSASSGASLSSSMNTANSLCL
GGTPASASSSSSRAAPLVTSGKAPPNLPQGVPPLLHNQYLVGPGGLLPAYPIYGYDELQMLQSRLPVDYY
GIPFAAPTALASRDGSLANNPYPGDVTKFGRGDSASPAPATTPAQPQQSQSQTHHTAQQPFVNPALPPGY
SYTGLPYYTGMPSAFQYGPTMFVPPASAKQHGVNLSTPTPPFQQASGYGQHGYSTGYDDLTQGTAAGDYS
KGGYAGSSQAPNKSAGSGPGKGVSVSSSTTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGP
LASGAAPGYAPPPFLHILPAHQQPHSQLLHHHLPQDAQSGSGQRSQPSSLQPKSQASKPAYGNSPYWTN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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