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Report for CCDS65493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65493.1 Public Homo sapiens 1 MAP7D1 24 110 108 CCDS HistoryNCBI Gene:55700Re-query CCDS DB by CCDS ID:65493.1Re-query CCDS DB by GeneID:55700See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316156.8 ENSP00000320228.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316156.8Link to Ensembl Protein Viewer:ENSP00000320228.4Re-query CCDS DB by Nucleotide ID:ENST00000316156Re-query CCDS DB by Protein ID:ENSP00000320228
Original member Current member NCBI NM_001286365.2 NP_001273294.1 Accepted alive Link to Nucleotide Sequence:NM_001286365.2Link to Protein Sequence:NP_001273294.1Re-query CCDS DB by Nucleotide ID:NM_001286365Re-query CCDS DB by Protein ID:NP_001273294Link to BLAST:NP_001273294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273294.1 803 Q3KQU3-2 803 100% 0 0

Chromosomal Locations for CCDS 65493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36156418 36156463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36170971 36171315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36171513 36171581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36172464 36172627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36173364 36173478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36176199 36176581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36176697 36176842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36177873 36178201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36178419 36178596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36178685 36178823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36178921 36179025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36179262 36179315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36179515 36179557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36179666 36179756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36179874 36180067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36180248 36180258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGGAGAGCGGCCCGCGTGCGGAGCTGGGGGCGGGCGCACCCCCAGCTGTGGTCGCCAGGACCCCCCCAG
AGCCAAGACCTTCTCCAGAAGGTGACCCTTCCCCCCCACCACCACCAATGTCAGCCCTGGTCCCCGACAC
TCCCCCGGACACCCCTCCTGCCATGAAGAATGCCACTAGCTCTAAGCAGCTCCCACTGGAACCAGAGAGC
CCCTCAGGGCAGGTCGGGCCTAGGCCAGCCCCCCCGCAGGAAGAGTCCCCTTCCTCTGAAGCAAAGAGCA
GAGGACCCACCCCACCAGCCATGGGCCCACGGGATGCCAGACCTCCTCGAAGGAGCAGCCAGCCATCTCC
AACAGCAGTGCCAGCCTCCGACAGCCCTCCCACCAAGCAAGAGGTGAAGAAGGCAGGAGAGAGACACAAG
CTGGCAAAGGAGCGGCGAGAAGAGCGGGCCAAGTACCTGGCGGCCAAGAAGGCAGTGTGGCTGGAGAAGG
AGGAGAAGGCCAAGGCGCTGCGGGAGAAGCAGCTCCAGGAGCGCCGGCGCCGGCTGGAGGAGCAACGTCT
TAAAGCCGAGCAACGCCGTGCAGCCCTGGAGGAACGGCAGCGGCAGAAGCTCGAGAAAAACAAGGAGCGC
TATGAAGCAGCCATCCAACGGTCAGTGAAGAAGACGTGGGCCGAAATCCGGCAGCAGCGCTGGTCCTGGG
CAGGGGCCCTGCACCACAGCTCTCCAGGACATAAGACCAATCGCAGCCTGCAGCTGAGCGCATGGGAGAG
CAGCATCGTGGATCGTCTGATGACGCCCACTCTCTCCTTCCTTGCTCGGAGTCGCAGCGCGGTCACACTG
CCCCGCAACGGCCGGGACCAGGGTAGGGGCTGCGACCCTGGGAGAGGCCCCACGTGGGGCCGGGCAGGGG
CCAGCCTGGCGCGCGGGCCGCAACCCGACCGCACTCATCCCTCTGCAGCCGTGCCGGTGTGCCCGCGCTC
GGCCTCCGCCAGCCCCCTGACGCCGTGCAGCGTCACCCGAAGCGTGCACCGCTGCGCCCCCGCCGGTGAG
CGCGGGGAGCGCCGCAAGCCCAACGCCGGGGGCAGCCCCGCTCCGGTGCGCCGCCGGCCGGAGGCCTCGC
CGGTGCAGAAAAAGGAGAAGAAGGACAAGGAGCGGGAAAACGAGAAGGAGAAGAGTGCCCTAGCCCGGGA
GCGCAGCCTCAAGAAGCGCCAGTCGCTGCCCGCCTCCCCACGTGCCCGCCTCTCTGCCAGCACCGCCTCT
GAGCTCAGCCCCAAATCCAAGGCCAGGCCATCCTCTCCCTCCACATCCTGGCACAGGCCTGCCTCCCCCT
GCCCCAGCCCAGGGCCAGGCCACACTCTGCCTCCAAAGCCACCGTCCCCCCGAGGCACCACTGCATCCCC
CAAGGGGCGGGTTCGGAGGAAGGAGGAGGCAAAGGAGAGCCCCAGCGCCGCAGGGCCCGAGGACAAGAGC
CAGAGCAAGCGCAGGGCCAGTAACGAGAAGGAGTCAGCAGCCCCAGCCTCACCGGCACCTTCGCCGGCGC
CCTCGCCCACCCCAGCCCCGCCCCAGAAGGAGCAGCCCCCCGCGGAGACCCCTACAGACGCTGCTGTCTT
GACCTCACCCCCAGCCCCTGCTCCCCCGGTGACCCCTAGCAAACCAATGGCCGGCACCACAGACCGAGAA
GAAGCCACTCGGCTCTTGGCTGAGAAGCGGCGCCAGGCCCGGGAGCAGCGGGAGCGCGAGGAGCAGGAGC
GGAGGCTGCAGGCAGAAAGGGACAAGCGAATGCGAGAGGAGCAGCTGGCACGGGAGGCCGAGGCCCGGGC
GGAGCGGGAGGCGGAGGCCCGGAGGCGGGAGGAGCAGGAGGCACGAGAGAAGGCGCAGGCCGAGCAGGAG
GAGCAGGAGCGGCTGCAGAAGCAGAAAGAGGAGGCCGAAGCTCGGTCGCGGGAAGAGGCGGAGCGGCAGC
GTCTGGAGCGGGAAAAGCACTTCCAGCAGCAGGAGCAAGAGCGGCAAGAGCGCAGAAAGCGTCTGGAGGA
GATCATGAAGAGGACTCGGAAGTCAGAAGTTTCTGAAACCAAGAAGCAGGACAGCAAGGAGGCCAACGCC
AACGGTTCCAGCCCAGAGCCTGTGAAAGCTGTGGAGGCTCGGTCCCCAGGGCTGCAGAAGGAGGCTGTGC
AGAAAGAGGAGCCCATCCCACAGGAGCCTCAGTGGAGTCTCCCAAGCAAGGAGTTGCCAGCGTCCCTGGT
GAATGGCCTGCAGCCTCTCCCAGCACACCAGGAGAATGGCTTCTCCACCAACGGACCCTCTGGGGACAAG
AGTCTGAGCCGAACACCAGAGACACTCCTGCCCTTTGCAGAGGCAGAAGCCTTCCTCAAGAAAGCTGTGG
TGCAGTCCCCGCAGGTCACAGAAGTCCTTTAA

Translation (803 aa):
MESGPRAELGAGAPPAVVARTPPEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSSKQLPLEPES
PSGQVGPRPAPPQEESPSSEAKSRGPTPPAMGPRDARPPRRSSQPSPTAVPASDSPPTKQEVKKAGERHK
LAKERREERAKYLAAKKAVWLEKEEKAKALREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKER
YEAAIQRSVKKTWAEIRQQRWSWAGALHHSSPGHKTNRSLQLSAWESSIVDRLMTPTLSFLARSRSAVTL
PRNGRDQGRGCDPGRGPTWGRAGASLARGPQPDRTHPSAAVPVCPRSASASPLTPCSVTRSVHRCAPAGE
RGERRKPNAGGSPAPVRRRPEASPVQKKEKKDKERENEKEKSALARERSLKKRQSLPASPRARLSASTAS
ELSPKSKARPSSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRKEEAKESPSAAGPEDKS
QSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQPPAETPTDAAVLTSPPAPAPPVTPSKPMAGTTDRE
EATRLLAEKRRQAREQREREEQERRLQAERDKRMREEQLAREAEARAEREAEARRREEQEAREKAQAEQE
EQERLQKQKEEAEARSREEAERQRLEREKHFQQQEQERQERRKRLEEIMKRTRKSEVSETKKQDSKEANA
NGSSPEPVKAVEARSPGLQKEAVQKEEPIPQEPQWSLPSKELPASLVNGLQPLPAHQENGFSTNGPSGDK
SLSRTPETLLPFAEAEAFLKKAVVQSPQVTEVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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