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Report for CCDS65918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65918.1 Public Homo sapiens 10 SLF2 24 110 108 CCDS HistoryNCBI Gene:55719Re-query CCDS DB by CCDS ID:65918.1Re-query CCDS DB by GeneID:55719See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65918.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000609386.1 ENSP00000476379.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000609386.1Link to Ensembl Protein Viewer:ENSP00000476379.1Re-query CCDS DB by Nucleotide ID:ENST00000609386Re-query CCDS DB by Protein ID:ENSP00000476379
Original member Current member NCBI NM_001243770.2 NP_001230699.1 Accepted alive Link to Nucleotide Sequence:NM_001243770.2Link to Protein Sequence:NP_001230699.1Re-query CCDS DB by Nucleotide ID:NM_001243770Re-query CCDS DB by Protein ID:NP_001230699Link to BLAST:NP_001230699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230699.1 63 Q8IX21-3 63 100% 0 0

Chromosomal Locations for CCDS 65918.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 100913111 100913302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (192 nt):
ATGACAAGGCGCTGCATGCCCGCTAGGCCAGGTTTCCCCTCATCCCCAGCCCCGGGGTCGTCGCCCCCGC
GCTGCCATCTGAGACCCGGTAGTACCGCCCATGCTGCAGCGGGAAAGAGAACAGAGAGTCCTGGGGACAG
GTACCGTGCAGAGGGCTTGAGAAGGGGCCGGGTCGCGGGGGCAAGGGTATGA

Translation (63 aa):
MTRRCMPARPGFPSSPAPGSSPPRCHLRPGSTAHAAAGKRTESPGDRYRAEGLRRGRVAGARV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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