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Report for CCDS65989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
65989.1 Public Homo sapiens 11 PHRF1 24 110 108 CCDS HistoryNCBI Gene:57661Re-query CCDS DB by CCDS ID:65989.1Re-query CCDS DB by GeneID:57661See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 65989.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413872.6 ENSP00000388589.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413872.6Link to Ensembl Protein Viewer:ENSP00000388589.2Re-query CCDS DB by Nucleotide ID:ENST00000413872Re-query CCDS DB by Protein ID:ENSP00000388589
Original member Current member NCBI NM_001286582.2 NP_001273511.1 Accepted alive Link to Nucleotide Sequence:NM_001286582.2Link to Protein Sequence:NP_001273511.1Re-query CCDS DB by Nucleotide ID:NM_001286582Re-query CCDS DB by Protein ID:NP_001273511Link to BLAST:NP_001273511.1

Chromosomal Locations for CCDS 65989.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 581513 581606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 581965 582081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 587259 587464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 591384 591467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 592559 592674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 596923 597020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 597395 597570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 598373 598502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 601574 601701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 605119 605300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 605608 605724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 606442 606596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 607066 609720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610196 610347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610501 610761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 610954 611082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 611634 611777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4944 nt):
ATGGATGACGACAGCCTGGATGAGCTTGTGGCCCGGAGCCCAGGGCCGGATGGACACCCACAGGTCGGCC
CTGCGGACCCGGCAGGTGACTTTGAAAGCAGCGTGGGCAGCAGTGGGGACTCTGGGGACGACAGTGACAG
CGAGCATGGAGATGGCACAGACGGAGAAGACGAGGGGGCGTCTGAGGAGGAAGACCTGGAAGACAGATCT
GGTTCCGAGGATTCTGAAGACGACGGGGAGACATTGCTGGAGGTAGCGGGTACTCAGGGGAAACTGGAAG
CCGCTGGCTCTTTCAATTCTGATGATGATGCAGAGAGCTGCCCAATCTGTCTCAACGCATTCAGAGACCA
GGCCGTGGGGACGCCGGAGAACTGTGCCCATTACTTCTGCCTGGACTGCATTGTCGAATGGTCCAAGAAT
GCCAATTCCTGTCCAGTTGATCGAACTCTATTTAAGTGCATTTGTATTCGAGCTCAATTTGGTGGTAAAA
TCTTAAGAAAGATCCCAGTGGAGAACACCAAAGCGAGCGAGGAGGAGGAGGACCCGACCTTCTGTGAGGT
GTGCGGCAGGAGCGACCGTGAGGACAGGCTTTTGCTCTGCGACGGCTGCGATGCGGGGTACCACATGGAA
TGCTTGGACCCCCCTCTCCAGGAGGTGCCGGTGGACGAGTGGTTCTGCCCGGAATGTGCTGCGCCTGGTG
TTGTCCTTGCCGCTGATGCGGGTCCCGTGAGTGAGGAGGAGGTCTCCCTGCTCTTGGCTGATGTGGTGCC
CACCACCAGCAGGCTTCGGCCTCGAGCAGGTAGGACCCGGGCGATAGCCAGGACACGGCAGAGTGAGAGA
GTGAGAGCAACCGTGAACCGGAACCGGATCTCCACGGCCAGGAGGGTCCAGCACACACCAGGGCGCCTCG
GGTCTTCCCTGCTGGATGAAGCCATCGAGGCTGTGGCGACTGGCCTGAGCACTGCCGTGTATCAGCGCCC
CCTGACGCCGCGCACTCCCGCCCGACGGAAGAGGAAGACAAGAAGACGGAAGAAAGTGCCGGGAAGAAAG
AAAACCCCGTCCGGACCATCCGCAAAAAGTAAGAGCTCAGCGACAAGATCTAAGAAACGCCAACATCGAG
TGAAGAAGAGAAGAGGGAAGAAGGTAAAGAGTGAAGCCACCACTCGCTCTCGAATCGCGCGGACGCTGGG
CCTGCGCAGGCCTGTTCACAGCAGCTGCATCCCGTCAGTGTTGAAGCCAGTGGAGCCCTCTTTGGGGCTG
CTGAGAGCGGATATTGGAGCTGCCTCTCTGTCTCTGTTTGGAGATCCTTATGAGCTGGATCCCTTCGACA
GTGAAGAGCTTTCTGCAAACCCTCTTTCCCCTCTGAGTGCCAAGAGACGGGCTCTGTCCCGGTCAGCCCT
GCAGTCCCACCAGCCCGTGGCCAGGCCCGTCTCCGTGGGGCTTTCCAGGAGGCGCCTCCCTGCCGCGGTG
CCAGAGCCAGACTTGGAGGAGGAGCCAGTGCCTGACCTGCTGGGCAGCATCCTGTCGGGCCAGAGCCTCC
TGATGCTGGGCAGCAGTGATGTCATCATCCACCGCGACGGCTCCCTCAGCGCCAAGAGGGCGGCTCCAGT
TTCTTTTCAGCGAAACTCAGGCAGTCTGTCCAGAGGGGAAGAAGGATTCAAGGGCTGCCTGCAGCCCCGA
GCACTGCCCTCCGGGAGCCCGGCCCAAGGCCCGTCAGGAAACAGGCCACAGAGCACAGGGCTCAGCTGTC
AAGGCAGGTCCCGCACCCCCGCCCGCACCGCGGGGGCGCCTGTGAGGCTGGACTTGCCAGCAGCCCCTGG
GGCGGTTCAGGCTCGGAACTTGTCAAATGGGAGTGTGCCTGGCTTCAGACAGAGCCACAGCCCCTGGTTC
AACGGCACCAACAAGCACACCTTGCCCCTTGCCTCTGCCGCGTCTAAGATCTCAAGCAGAGATTCTAAGC
CCCCATGTCGCAGTGTGGTGCCGGGGCCTCCCCTGAAGCCAGCGCCCAGAAGAACAGACATCTCTGAGCT
ACCCAGGATACCAAAGATCAGGAGAGATGACGGTGGTGGCAGACGGGATGCGGCCCCGGCCCACGGGCAG
AGCATTGAGATCCCCAGTGCCTGCATCAGCCGACTGACTGGCAGGGAGGGCACCGGGCAGCCAGGGCGAG
GCACACGGGCAGAGAGCGAGGCCAGCAGCAGGGTGCCCCGGGAGCCCGGGGTGCACACGGGCAGCTCCCG
GCCCCCAGCCCCCAGCTCCCATGGCAGTTTGGCCCCACTGGGACCATCAAGAGGGAAAGGGGTCGGGTCG
ACCTTTGAGAGCTTCCGGATCAATATTCCTGGAAACATGGCACATTCCAGCCAGCTCTCCAGCCCTGGCT
TCTGTAACACGTTCCGGCCTGTGGACGATAAGGAGCAGAGGAAGGAGAACCCCTCACCCCTCTTCTCCAT
CAAGAAGACGAAGCAGCTGCGGAGCGAGGTCTACGACCCATCCGACCCCACCGGCTCCGACTCCAGCGCC
CCTGGCAGCAGCCCCGAGAGGTCTGGCCCCGGCCTCCTGCCCTCTGAGATCACACGAACCATCTCCATCA
ACAGCCCGAAGGCCCAGACGGTGCAGGCTGTGCGCTGCGTCACCTCCTACACGGTGGAGAGCATCTTTGG
TACAGAGCCCGAACCCCCTCTCGGACCGTCCTCCGCCATGTCCAAGCTCCGGGGTGCAGTGGCTGCCGAG
GGGGCCTCTGACACGGAGCGAGAGGAGCCCACAGAGAGCCAGGGCCTGGCTGCCCGGCTGCGGAGGCCAT
CCCCCCCAGAGCCCTGGGATGAGGAGGATGGGGCGTCTTGCAGCACCTTCTTTGGCTCTGAGGAGCGGAC
GGTGACCTGTGTGACTGTCGTGGAGCCGGAAGCCCCACCCAGCCCGGACGTGCTGCAGGCTGCCACCCAC
AGAGTCGTGGAGCTCAGGCCCCCTTCCCGGTCCCGCTCCACATCCAGCTCCCGCAGCAGGAAGAAGGCCA
AGAGGAAGAGGGTGTCCAGGGAGCACGGACGGACGCGCTCTGGGACGCGCTCTGAATCCAGGGACAGGAG
CTCGAGGTCAGCGTCACCATCAGTGGGTGAGGAGCGCCCCAGGAGGCAGCGGTCCAAGGCCAAGAGCCGG
CGGTCCTCCAGTGACCGCTCCAGCAGCCGAGAGCGAGCTAAGAGGAAGAAAGCCAAGGACAAGAGCAGGG
AGCACAGGCGGGGCCCCTGGGGCCACAGCCGGAGGACGTCCCGGTCGCGGTCGGGGAGCCCTGGCAGCTC
TTCCTATGAGCACTATGAGAGTAGGAAGAAGAAGAAAAGGAGATCAGCGTCCAGACCTCGGGGAAGGGAG
TGCTCCCCCACCAGCAGCCTGGAGAGGCTCTGCAGGCACAAGCATCAGCGGGAACGCAGCCACGAGCGGC
CAGACAGGAAGGAGAGTGTGGCGTGGCCCCGAGACCGGAGGAAGCGGAGGTCCCGGTCCCCAAGCTCGGA
GCACAGGGCACGGGAGCACAGGCGGCCTCGGTCCCGTGAGAAGTGGCCGCAGACCCGGTCCCATTCCCCA
GAGAGGAAGGGGGCTGTGAGGGAGGCTTCCCCAGCGCCCCTTGCACAGGGGGAGCCAGGGCGGGAAGACC
TCCCCACCAGGTTGCCAGCCTTGGGGGAAGCACATGTCTCGCCGGAGGTGGCTACGGCCGACAAGGCCCC
CCTGCAGGCTCCCCCTGTCCTGGAGGTGGCAGCTGAGTGTGAGCCGGACGACCTGGACCTGGATTATGGC
GACTCCGTGGAGGCCGGACACGTCTTTGATGATTTCTCAAGCGACGCCGTTTTCATCCAGCTCGATGACA
TGAGCTCGCCACCTTCTCCCGAAAGCACAGACTCTTCCCCGGAGCGAGACTTCCCACTGAAGCCTGCGTT
GCCCCCAGCCAGCCTGGCCGTGGCCGCCATCCAGAGGGAGGTGTCATTGATGCACGATGAAGACCCTTCG
CAGCCCCCACCCCTGCCAGAGGGCACCCAGGAGCCACATTTGCTCAGGCCGGACGCGGCTGAGAAGGCTG
AGGCACCCAGTTCCCCGGATGTGGCGCCTGCGGGGAAGGAAGACAGCCCCTCTGCGAGTGGGAGGGTACA
GGAGGCAGCCCGGCCTGAGGAGGTGGTTTCGCAGACCCCCCTGCTGCGGTCCAGAGCCCTGGTGAAGCGG
GTCACCTGGAACCTGCAGGAGTCGGAGAGCAGCGCCCCCGCCGAGGACAGAGCCCCCCGGGCACCACTTC
ACAGGCCACAGAAGCCCCGAGAAGGAGCCTGGGACATGGAGGATGTGGCCCCCACAGGGGTCAGGCAGGT
GTTCTCCGAGCTGCCCTTTCCCAGTCACGTGCTTCCGGAACCCGGGTTCCCAGACACAGACCCCTCTCAG
GTTTACAGCCCCGGCCTGCCGCCTGCCCCGGCCCAGCCCTCAAGCATCCCACCCTGCGCACTGGTCAGCC
AGCCCACGGTCCAGTTCATCCTTCAGGGGAGCCTGCCGCTAGTGGGCTGTGGGGCAGCACAGACCCTGGC
CCCAGTGCCCGCTGCCCTGACCCCAGCCTCAGAGCCAGCCAGTCAAGCCACTGCAGCCAGCAACTCGGAG
GAGAAGACCCCGGCCCCCAGGCTAGCTGCGGAGAAAACCAAGAAGGAGGAGTACATGAAGAAGCTGCACA
TGCAGGAGCGTGCTGTGGAGGAGGTGAAGCTGGCCATCAAGCCCTTCTACCAGAAGAGGGAGGTGACCAA
GGAGGAGTACAAGGACATCCTGCGCAAGGCCGTGCAGAAGATCTGCCACAGCAAGAGTGGAGAGATCAAC
CCCGTGAAGGTGGCCAACCTGGTGAAGGCGTACGTGGACAAGTACAGGCACATGCGCAGGCACAAGAAAC
CAGAGGCCGGGGAGGAGCCGCCCACGCAGGGGGCCGAGGGCTGA

Translation (1647 aa):
MDDDSLDELVARSPGPDGHPQVGPADPAGDFESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRS
GSEDSEDDGETLLEVAGTQGKLEAAGSFNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKN
ANSCPVDRTLFKCICIRAQFGGKILRKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHME
CLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVSEEEVSLLLADVVPTTSRLRPRAGRTRAIARTRQSER
VRATVNRNRISTARRVQHTPGRLGSSLLDEAIEAVATGLSTAVYQRPLTPRTPARRKRKTRRRKKVPGRK
KTPSGPSAKSKSSATRSKKRQHRVKKRRGKKVKSEATTRSRIARTLGLRRPVHSSCIPSVLKPVEPSLGL
LRADIGAASLSLFGDPYELDPFDSEELSANPLSPLSAKRRALSRSALQSHQPVARPVSVGLSRRRLPAAV
PEPDLEEEPVPDLLGSILSGQSLLMLGSSDVIIHRDGSLSAKRAAPVSFQRNSGSLSRGEEGFKGCLQPR
ALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSNGSVPGFRQSHSPWF
NGTNKHTLPLASAASKISSRDSKPPCRSVVPGPPLKPAPRRTDISELPRIPKIRRDDGGGRRDAAPAHGQ
SIEIPSACISRLTGREGTGQPGRGTRAESEASSRVPREPGVHTGSSRPPAPSSHGSLAPLGPSRGKGVGS
TFESFRINIPGNMAHSSQLSSPGFCNTFRPVDDKEQRKENPSPLFSIKKTKQLRSEVYDPSDPTGSDSSA
PGSSPERSGPGLLPSEITRTISINSPKAQTVQAVRCVTSYTVESIFGTEPEPPLGPSSAMSKLRGAVAAE
GASDTEREEPTESQGLAARLRRPSPPEPWDEEDGASCSTFFGSEERTVTCVTVVEPEAPPSPDVLQAATH
RVVELRPPSRSRSTSSSRSRKKAKRKRVSREHGRTRSGTRSESRDRSSRSASPSVGEERPRRQRSKAKSR
RSSSDRSSSRERAKRKKAKDKSREHRRGPWGHSRRTSRSRSGSPGSSSYEHYESRKKKKRRSASRPRGRE
CSPTSSLERLCRHKHQRERSHERPDRKESVAWPRDRRKRRSRSPSSEHRAREHRRPRSREKWPQTRSHSP
ERKGAVREASPAPLAQGEPGREDLPTRLPALGEAHVSPEVATADKAPLQAPPVLEVAAECEPDDLDLDYG
DSVEAGHVFDDFSSDAVFIQLDDMSSPPSPESTDSSPERDFPLKPALPPASLAVAAIQREVSLMHDEDPS
QPPPLPEGTQEPHLLRPDAAEKAEAPSSPDVAPAGKEDSPSASGRVQEAARPEEVVSQTPLLRSRALVKR
VTWNLQESESSAPAEDRAPRAPLHRPQKPREGAWDMEDVAPTGVRQVFSELPFPSHVLPEPGFPDTDPSQ
VYSPGLPPAPAQPSSIPPCALVSQPTVQFILQGSLPLVGCGAAQTLAPVPAALTPASEPASQATAASNSE
EKTPAPRLAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEIN
PVKVANLVKAYVDKYRHMRRHKKPEAGEEPPTQGAEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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