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Report for CCDS66196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66196.1 Public Homo sapiens 11 CCDC83 24 110 108 CCDS HistoryNCBI Gene:220047Re-query CCDS DB by CCDS ID:66196.1Re-query CCDS DB by GeneID:220047See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342404.8 ENSP00000344512.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342404.8Link to Ensembl Protein Viewer:ENSP00000344512.3Re-query CCDS DB by Nucleotide ID:ENST00000342404Re-query CCDS DB by Protein ID:ENSP00000344512
Original member Current member NCBI NM_001286159.2 NP_001273088.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001286159.2Link to Protein Sequence:NP_001273088.1Re-query CCDS DB by Nucleotide ID:NM_001286159Re-query CCDS DB by Protein ID:NP_001273088Link to BLAST:NP_001273088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273088.1 413 Q8IWF9-1 413 100% 0 0

Chromosomal Locations for CCDS 66196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85865124 85865218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85873211 85873295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85882513 85882675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85886200 85886367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85895293 85895384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85898947 85899015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85911281 85911402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85915419 85915498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85916028 85916233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85919349 85919510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1242 nt):
ATGGAAAACTCAGGGAAAGCAAATAAAAAGGATACACATGACGGGCCACCAAAAGAAATTAAACTGCCTA
CCAGTGAAGCACTTCTAGACTATCAATGTCAAATAAAGGAAGATGCCGTGGAGCAATTCATGTTTCAAAT
AAAGACACTTAGGAAAAAGAACCAAAAATATCATGAAAGAAATAGCCGCTTAAAAGAAGAACAGATTTGG
CACATACGGCATCTACTAAAGGAACTGAGTGAAGAGAAGGCAGAGGGATTGCCAGTTGTAACAAGAGAGG
ATGTTGAAGAAGCGATGAAGGAAAAATGGAAGTTTGAAAGAGACCAGGAAAAAAACTTGAGAGATATGCG
CATGCAAATAAGTAATGCTGAGAAACTATTTCTTGAGAAACTCAGTGAAAAGGAATATTGGGAGGAGTAC
AAGAATGTAGGGAGTGAACGACATGCTAAACTCATTACCTCCTTACAAAATGACATCAACACAGTTAAAG
AGAATGCAGAGAAAATGTCAGAACACTATAAAATCACTCTGGAAGATACTAGAAAGAAAATAATCAAGGA
AACTTTGTTGCAACTGGACCAAAAGAAGGAATGGGCCACACAGAATGCTGTAAAGCTCATTGACAAGGGC
AGTTATCTAGAGATCTGGGAGAATGACTGGCTCAAAAAAGAGGTTGCAATTCACAGGAAGGAAGTTGAAG
AATTAAAAAATGCTATTCATGAACTGGAAGCAGAAAATTTGGTGCTTATTGATCAACTATCCAACTGTAG
ACTTGTGGATCTCAAGATACCCAGGCGACTATATCTTACCCAAGCTGCTGGACTAGAAGTGCCACCTGAA
GAAATGTCTTTGGAATTGCCAGAAACACATATAGAAGAGAAGTCAGAATTGCAACCCACAGAAGTAGAAA
GTAGAGACTTGATGTCCTCATCAGATGAGAGCACTATCTTACATCTTAGTCATGAAAATAGCATCGAAGA
TCTCCAGTATGTGAAGATAGATAAAGAGGAAAACTCAGGCACAGAGTTTGGGGACACTGATATGAAGTAC
TTACTATATGAGGATGAGAAGGATTTCAAGGATTATGTAAACTTGGGCCCCCTGGGAGTGAAGCTTATGA
GTGTGGAGAGCAAGAAAATGCCCATTCATTTTCAAGAGAAGGAAATTCCAGTCAAACTCTATAAAGATGT
CAGGAGCCCAGAAAGCCACATCACATATAAGATGATGAAGTCTTTTCTCTAA

Translation (413 aa):
MENSGKANKKDTHDGPPKEIKLPTSEALLDYQCQIKEDAVEQFMFQIKTLRKKNQKYHERNSRLKEEQIW
HIRHLLKELSEEKAEGLPVVTREDVEEAMKEKWKFERDQEKNLRDMRMQISNAEKLFLEKLSEKEYWEEY
KNVGSERHAKLITSLQNDINTVKENAEKMSEHYKITLEDTRKKIIKETLLQLDQKKEWATQNAVKLIDKG
SYLEIWENDWLKKEVAIHRKEVEELKNAIHELEAENLVLIDQLSNCRLVDLKIPRRLYLTQAAGLEVPPE
EMSLELPETHIEEKSELQPTEVESRDLMSSSDESTILHLSHENSIEDLQYVKIDKEENSGTEFGDTDMKY
LLYEDEKDFKDYVNLGPLGVKLMSVESKKMPIHFQEKEIPVKLYKDVRSPESHITYKMMKSFL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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