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Report for CCDS66326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66326.1 Public Homo sapiens 12 ATF7IP 24 110 108 CCDS HistoryNCBI Gene:55729Re-query CCDS DB by CCDS ID:66326.1Re-query CCDS DB by GeneID:55729See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544627.5 ENSP00000440440.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544627.5Link to Ensembl Protein Viewer:ENSP00000440440.1Re-query CCDS DB by Nucleotide ID:ENST00000544627Re-query CCDS DB by Protein ID:ENSP00000440440
Original member Current member NCBI NM_181352.2 NP_851997.1 Accepted alive Link to Nucleotide Sequence:NM_181352.2Link to Protein Sequence:NP_851997.1Re-query CCDS DB by Nucleotide ID:NM_181352Re-query CCDS DB by Protein ID:NP_851997Link to BLAST:NP_851997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851997.1 1278 Q6VMQ6-4 1278 100% 0 0

Chromosomal Locations for CCDS 66326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 14385384 14385400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14423909 14425473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14434337 14434423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14436106 14436251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14438130 14438267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14446988 14447053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14456561 14456634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14457207 14457295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14460495 14461133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14466526 14466590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14475890 14475968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14478317 14478472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14481003 14481185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14496231 14496343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 14497654 14498073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3837 nt):
ATGCATCAGGACCAGAGATTCAGAATGGACAGTTTAGAAGAACCTCAGAAAAAAGTCTTTAAGGCTCGAA
AA
ACGATGAGAGTGAGTGATCGTCAGCAACTTGAAGCAGTGTACAAGGTCAAAGAAGAACTGTTGAAAAC
T
GATGTCAAGCTGTTAAATGGCAACCATGAAAATGGAGATTTGGACCCAACCTCACCTTTGGAAAACATG
GAT
TACATTAAAGACAAGGAAGAGGTGAATGGCATTGAAGAGATTTGTTTTGATCCTGAAGGAAGTAAAG
CA
GAATGGAAGGAAACACCCTGTATCCTAAGTGTTAATGTAAAAAACAAGCAGGATGATGATTTAAATTG
T
GAACCTTTGTCTCCCCATAATATAACTCCAGAACCAGTCTCTAAACTGCCTGCTGAACCAGTTTCTGGT
GAT
CCAGCCCCTGGTGATCTGGATGCCGGAGATCCAGCCTCCGGAGTACTGGCCTCTGGTGATTCCACCT
CT
GGTGATCCCACCTCTAGCGAGCCCTCCTCTAGTGATGCTGCCTCTGGTGATGCAACCTCTGGTGATGC
C
CCTTCTGGTGATGTGTCCCCTGGTGATGCCACCTCTGGTGATGCCACTGCTGATGATCTCTCCTCTGGT
GAT
CCCACCTCTAGTGATCCCATCCCAGGTGAACCGGTCCCTGTTGAACCCATTTCTGGTGATTGTGCCG
CT
GATGATATAGCCTCTAGTGAAATAACTTCTGTTGATCTGGCTTCTGGAGCACCAGCTTCCACTGATCC
A
GCCTCTGATGATCTGGCCTCTGGTGATCTATCCTCTAGTGAACTGGCCTCTGATGATCTGGCCACTGGT
GAA
CTGGCCTCTGATGAGCTGACTTCTGAATCAACCTTTGATCGTACCTTTGAACCAAAGTCTGTACCAG
TT
TGTGAACCAGTTCCTGAAATTGACAATATAGAACCAAGTAGCAATAAAGATGATGATTTTCTTGAAAA
A
AATGGAGCTGATGAAAAATTAGAGCAAATTCAGAGTAAAGACTCATTGGATGAGAAAAATAAAGCTGAT
AAT
AATATTGATGCTAATGAAGAAACTCTAGAAACAGATGATACAACTATTTGTTCAGATCGACCTCCTG
AA
AATGAAAAGAAGGTAGAGGAAGATATTATCACAGAGCTTGCTCTTGGAGAAGATGCTATATCTAGCAG
T
ATGGAAATTGACCAAGGTGAAAAGAATGAAGATGAAACTTCTGCAGATCTTGTAGAAACGATTAATGAA
AAT
GTTATTGAAGATAACAAAAGTGAGAATATCTTAGAAAATACAGACTCTATGGAGACAGATGAAATCA
TT
CCTATTTTGGAAAAGCTTGCACCTTCTGAGGATGAACTTACTTGCTTTTCTAAAACATCTCTCCTTCC
A
ATCGATGAGACAAATCCAGATTTGGAAGAGAAAATGGAAAGTTCTTTTGGTTCACCATCTAAACAAGAA
AGT
AGTGAGAGTTTGCCAAAAGAAGCCTTTCTGGTCCTCTCTGATGAAGAGGATATTTCGGGTGAAAAAG
AT
GAGTCTGAAGTTATATCGCAAAATGAAACGTGCTCTCCAGCAGAAGTAGAAAGTAATGAAAAGGACAA
C
AAACCTGAGGAAGAAGAGCAAGTAATACATGAAGATGATGAAAGACCTTCTGAGAAAAATGAATTTTCT
AGA
CGAAAACGTTCTAAATCAGAAGACATGGACAATGTACAGTCTAAACGTCGTCGATATATGGAAGAAG
AA
TATGAGGCAGAATTTCAAGTAAAGATTACAGCCAAAGGAGACATTAACCAGAAACTTCAAAAGGTTAT
A
CAGTGGTTGCTGGAAGAAAAATTGTGTGCGCTGCAGTGTGCTGTATTTGATAAGACTTTGGCAGAATTG
AAA
ACACGAGTGGAAAAGATTGAATGTAACAAGAGGCATAAAACAGTTCTCACTGAACTACAGGCCAAGA
TA
GCCAGGTTAACCAAACGCTTTGAAGCAGCCAAAGAAGATCTTAAGAAAAGACATGAACATCCACCCAA
C
CCACCAGTATCACCAGGAAAAACTGTAAATGATGTCAACAGCAATAATAACATGTCTTACAGAAATGCA
GGC
ACAGTGAGACAGATGCTGGAGTCCAAAAGAAATGTAAGCGAGAGTGCACCACCATCCTTTCAAACTC
CT
GTGAATACAGTATCTTCAACCAATCTTGTCACTCCTCCAGCAGTTGTCAGTAGTCAACCTAAATTGCA
G
ACTCCAGTGACTTCGGGTTCCCTCACAGCAACGTCAGTTCTTCCTGCACCCAATACAGCTACTGTAGTT
GCT
ACTACTCAGGTGCCTAGTGGAAATCCCCAGCCTACAATCTCTTTACAGCCTTTGCCAGTGATTTTGC
AT
GTACCTGTTGCAGTATCCTCCCAGCCTCAGCTTCTACAGAGCCATCCAGGGACTTTGGTGACTAATCA
A
CCATCTGGCAATGTTGAATTCATTTCTGTGCAAAGCCCACCTACAGTGAGTGGTCTTACCAAAAATCCA
GTA
TCCTTGCCATCCTTGCCAAATCCCACTAAACCAAACAACGTTCCTTCTGTGCCCAGTCCTAGTATTC
AA
AGGAACCCTACTGCCAGTGCTGCACCATTGGGAACAACACTTGCTGTGCAGGCTGTTCCAACAGCACA
C
TCTATTGTACAAGCCACAAGGACTTCTTTACCCACAGTGGGCCCATCAGGACTCTATAGTCCATCAACT
AAT
CGAGGTCCTATACAGATGAAAATTCCAATTTCTGCATTTAGTACTTCGTCTGCTGCAGAACAGAACA
GC
AATACCACCCCAAGAATTGAAAACCAGACAAACAAAACAATAGATGCTTCTGTCAGTAAGAAAGCAGC
T
GATAGCACATCACAGTGTGGAAAAGCCACTGGCAGTGATTCAAGTGGTGTCATTGATCTCACAATGGAT
GAT
GAAGAGAGTGGAGCTTCACAAGACCCCAAAAAACTAAATCACACTCCTGTATCAACCATGAGTTCTT
CT
CAGCCTGTGTCACGACCATTGCAACCCATACAACCAGCACCGCCTCTTCAACCATCTGGGGTGCCAAC
A
AGTGGACCATCTCAGACCACCATACACTTACTACCTACAGCTCCAACTACCGTGAATGTAACACATCGT
CCA
GTAACTCAGGTGACCACAAGACTCCCTGTACCAAGAGCTCCTGCAAACCACCAGGTGGTTTATACAA
CT
CTTCCTGCACCACCAGCTCAGGCTCCCTTGCGAGGAACTGTTATGCAGGCTCCTGCTGTTCGGCAGGT
C
AATCCCCAAAATAGTGTTACAGTTCGAGTGCCTCAAACAACCACATATGTTGTAAACAATGGACTAACC
CTG
GGATCAACAGGACCTCAGCTCACAGTGCATCACCGACCACCACAAGTGCATACTGAGCCCCCACGCC
CC
GTGCACCCAGCACCCTTACCAGAAGCTCCACAACCACAGCGTCTGCCCCCAGAAGCTGCCAGCACATC
T
CTGCCTCAGAAGCCACACTTGAAGTTAGCACGCGTTCAGAGTCAAAATGGCATAGTACTGTCATGGAGT
GTC
CTGGAGGTGGATCGAAGCTGTGCCACTGTTGATAGCTACCATCTCTATGCTTACCATGAGGAACCCA
GT
GCCACTGTGCCCTCACAATGGAAAAAGATTGGGGAAGTCAAGGCACTTCCCTTGCCCATGGCATGTAC
T
CTCACCCAGTTTGTATCTGGTAGCAAATACTACTTTGCAGTACGAGCCAAGGATATTTATGGACGTTTT
GGG
CCTTTCTGTGATCCTCAGTCAACAGATGTGATCTCTTCTACCCAGAGCAGTTAA


Translation (1278 aa):
MHQDQRFRMDSLEEPQKKVFKARKTMRVSDRQQLEAVYKVKEELLKTDVKLLNGNHENGDLDPTSPLENM
D
YIKDKEEVNGIEEICFDPEGSKAEWKETPCILSVNVKNKQDDDLNCEPLSPHNITPEPVSKLPAEPVSG
D
PAPGDLDAGDPASGVLASGDSTSGDPTSSEPSSSDAASGDATSGDAPSGDVSPGDATSGDATADDLSSG
D
PTSSDPIPGEPVPVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATG
E
LASDELTSESTFDRTFEPKSVPVCEPVPEIDNIEPSSNKDDDFLEKNGADEKLEQIQSKDSLDEKNKAD
N
NIDANEETLETDDTTICSDRPPENEKKVEEDIITELALGEDAISSSMEIDQGEKNEDETSADLVETINE
N
VIEDNKSENILENTDSMETDEIIPILEKLAPSEDELTCFSKTSLLPIDETNPDLEEKMESSFGSPSKQE
S
SESLPKEAFLVLSDEEDISGEKDESEVISQNETCSP
AEVESNEKDNKPEEEEQVIHEDDERPSEKNEFS
R
RKRSKSEDMDNVQSKRRRYMEEEYEAEFQVKITAKGDINQKLQK
VIQWLLEEKLCALQCAVFDKTLAEL
K
TRVEKIECNKRHKTVLTELQ
AKIARLTKRFEAAKEDLKKRHEHPPNPPVSPGKTVNDVNSNNNMSYRNA
G
TVRQMLESKRNVSESAPPSFQTPVNT
VSSTNLVTPPAVVSSQPKLQTPVTSGSLTATSVLPAPNTATVV
A
TTQVPSGNPQPTISLQPLPVILHVPVAVSSQPQLLQSHPGTLVTNQPSGNVEFISVQSPPTVSGLTKNP
V
SLPSLPNPTKPNNVPSVPSPSIQRNPTASAAPLGTTLAVQAVPTAHSIVQATRTSLPTVGPSGLYSPST
N
RGPIQMKIPISAFSTSSAAEQNSNTTPRI
ENQTNKTIDASVSKKAADSTSQCGKATGSDSSGVIDLTMD
D
EESGASQ
DPKKLNHTPVSTMSSSQPVSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVNVTHR
P
VTQVTTRLPVPRAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQN
SVTVRVPQTTTYVVNNGLT
L
GSTGPQLTVHHRPPQVHT
EPPRPVHPAPLPEAPQPQRLPPEAASTSLPQKPHLKLARVQSQNGIVLSWS
V
LEVDRSCATVDSYHLYAYHEEPSATVPSQWKKIGEVKALPLPMACTLTQFVSGSKYYFAVRAKDIYGRF
G
PFCDPQSTDVISSTQSS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser