NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6651.1 Public Homo sapiens 9 OSTF1 24 110 108 CCDS HistoryNCBI Gene:26578Re-query CCDS DB by CCDS ID:6651.1Re-query CCDS DB by GeneID:26578See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6651.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346234.7 ENSP00000340836.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000346234.7Link to Ensembl Protein Viewer:ENSP00000340836.6Re-query CCDS DB by Nucleotide ID:ENST00000346234Re-query CCDS DB by Protein ID:ENSP00000340836
Original member Current member NCBI NM_012383.5 NP_036515.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012383.5Link to Protein Sequence:NP_036515.4Re-query CCDS DB by Nucleotide ID:NM_012383Re-query CCDS DB by Protein ID:NP_036515Link to BLAST:NP_036515.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036515.4 214 Q92882 214 100% 0 0

Chromosomal Locations for CCDS 6651.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75088693 75088726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75117504 75117550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75127569 75127619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75130578 75130641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75131770 75131823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75133294 75133401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75134346 75134395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75137538 75137616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75140834 75140932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75146683 75146741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGTCGAAGCCGCCACCCAAACCAGTCAAACCAGGGCAAGTTAAAGTCTTCAGAGCCCTGTATACGTTTG
AACCCAGAACTCCAGATGAATTATACTTTGAGGAAGGTGATATTATCTACATTACTGACATGAGCGATAC
CAATTGGTGGAAAGGCACCTCCAAAGGCAGGACTGGACTAATTCCAAGCAACTATGTGGCTGAGCAGGCA
GAATCCATTGACAATCCATTGCATGAAGCAGCAAAAAGAGGCAACTTGAGCTGGTTGAGAGAGTGTTTGG
ACAACAGAGTGGGTGTTAATGGCTTAGACAAAGCTGGAAGCACTGCCTTATACTGGGCTTGCCACGGGGG
CCACAAAGATATAGTGGAAATGCTATTTACTCAACCAAATATTGAACTGAACCAGCAGAACAAGTTGGGA
GATACAGCTTTGCATGCTGCTGCCTGGAAGGGTTATGCAGATATCGTCCAGTTGCTTCTGGCAAAAGGTG
CTAGAACAGACTTAAGAAACATTGAGAAGAAGCTGGCCTTCGACATGGCTACCAATGCTGCCTGTGCATC
TCTCCTGAAAAAGAAACAGGGAACAGATGCAGTTCGAACATTAAGCAATGCCGAGGACTATCTCGATGAT
GAAGACTCAGATTAA

Translation (214 aa):
MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA
ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLG
DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD
EDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH