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Report for CCDS66517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66517.1 Public Homo sapiens 13 SPATA13 24 110 108 CCDS HistoryNCBI Gene:221178Re-query CCDS DB by CCDS ID:66517.1Re-query CCDS DB by GeneID:221178See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399949.6 ENSP00000382830.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399949.6Link to Ensembl Protein Viewer:ENSP00000382830.2Re-query CCDS DB by Nucleotide ID:ENST00000399949Re-query CCDS DB by Protein ID:ENSP00000382830
Original member Current member NCBI NM_001286795.2 NP_001273724.1 Accepted alive Link to Nucleotide Sequence:NM_001286795.2Link to Protein Sequence:NP_001273724.1Re-query CCDS DB by Nucleotide ID:NM_001286795Re-query CCDS DB by Protein ID:NP_001273724Link to BLAST:NP_001273724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273724.1 574 Q96N96-2 574 100% 0 0

Chromosomal Locations for CCDS 66517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24270858 24270912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24284135 24284271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286214 24286393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286765 24286950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24288999 24289178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24290652 24290884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24294739 24294868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24297363 24297735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24300401 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24302598 24302773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGTAGCTAGAGGGGAGATAGCAAGATTCTGGAGTCTGGAAAGCCTTCACTTGGTTTCTTCAGATGGAG
GTACTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGACCTCTGCCA
GGCCAGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGTGATGGCAAC
GTGGTCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCAAAGCCGGGG
ATGTCATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAAGGAAGCCTG
GTTCCCCGCGAGCTTCGTCAGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGCAGCACCCCC
AGTGAGGAGCAGGACGAGGAGGCCAGCCAGAGCCGCCACAGACACTGTGAGAACAAGCAGCAGATGCGGA
CCAACGTCATCCGGGAGATCATGGACACCGAGCGGGTGTACATCAAACACCTCAGGGACATCTGTGAGGG
CTATATCCGACAGTGCCGCAAGCACACAGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAAC
ATTGAAGATATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAAC
CTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATCAAGAGGGCTTTGCCATCTATTCCGAGTACTG
CAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATGAAGCAGGGCAAGTACAGACATTTCTTT
GAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACGGGTTCCTGCTCACACCAGTGCAGA
AGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATACCACACAGGAACACGGTGATTACAG
CAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTGATCAACGAGCGCAAGCGCAAGCTG
GAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTGGGAGGGACTGGATATCTTAGACC
GAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAGGCAAAAGCCAGCAGCGGAC
GTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTGTACTAC
AAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAAGGACTGCAACC
TCAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTGTGCCAAAAA
ACAAGAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAGGACAAGGAG
ATGGGAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAGGACATGGAA
AGTCAAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCACCAGCGCCA
CATCACTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGGAAGTCCTCG
CTCTTCTGGCACACCTTCAACAGGCTCACCCCCTTCCGGAAATGA

Translation (574 aa):
MVARGEIARFWSLESLHLVSSDGGTEPSALVDDNGSEEDFSYEDLCQASPRYLQPGGEQLAINELISDGN
VVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWFPASFVRLRVNQEELSENSSSTP
SEEQDEEASQSRHRHCENKQQMRTNVIREIMDTERVYIKHLRDICEGYIRQCRKHTGMFTVAQLATIFGN
IEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGFAIYSEYCNNHPGACLELANLMKQGKYRHFF
EACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSNIKAAYEAMKNVACLINERKRKL
ESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTFFLFDHQLVSCKKDLLRRDMLYY
KGRLDMDEMELVDLGDGRDKDCNLSVKNAFKLVSRTTDEVYLFCAKKQEDKARWLQACADERRRVQEDKE
MGMEISENQKKLAMLNAQKAGHGKSKGYNRCPVAPPHQGLHPIHQRHITMPTSVPQQQVFGLAEPKRKSS
LFWHTFNRLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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