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Report for CCDS66542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66542.1 Public Homo sapiens 13 RUBCNL 24 110 108 CCDS HistoryNCBI Gene:80183Re-query CCDS DB by CCDS ID:66542.1Re-query CCDS DB by GeneID:80183See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000631139.2 ENSP00000485932.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000631139.2Link to Ensembl Protein Viewer:ENSP00000485932.1Re-query CCDS DB by Nucleotide ID:ENST00000631139Re-query CCDS DB by Protein ID:ENSP00000485932
Original member Current member EBI ENST00000676051.1 ENSP00000501843.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676051.1Link to Ensembl Protein Viewer:ENSP00000501843.1Re-query CCDS DB by Nucleotide ID:ENST00000676051Re-query CCDS DB by Protein ID:ENSP00000501843
Original member Current member NCBI NM_001286764.3 NP_001273693.1 Accepted alive Link to Nucleotide Sequence:NM_001286764.3Link to Protein Sequence:NP_001273693.1Re-query CCDS DB by Nucleotide ID:NM_001286764Re-query CCDS DB by Protein ID:NP_001273693Link to BLAST:NP_001273693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273693.1 527 Q9H714-6 527 100% 0 0

Chromosomal Locations for CCDS 66542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 46343385 46343497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46344741 46344831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46345447 46345600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46349286 46349347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46350113 46350351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46356432 46356496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46359486 46359631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46361441 46361573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46362538 46362598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46363115 46363213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368042 46368249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368733 46368815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46371941 46372070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGTCCGCCCAGGATACTCTCATCGGGTGTCTCTGCCCACAAGCCCTGGGATTTTGGCCACCTCCCCAT
ATCCTGAGACTGACAGTGCTTTTTTTGAGCCTTCCCATCTGACATCTGCTGCTGATGAAGGTGCTGTTCA
AGTCAGTAGAAGAACCATTTCTTCGAATTCCTTCTCACCAGAGGTATTTGTGCTGCCTGTTGATGTAGAA
AAGGAAAATGCCCACTTTTATGTTGCAGATATGATTATATCAGCAATGGAGAAAATGAAGTGTAACATTC
TGAGTCAACAGCAGACAGAGAGCTGGAGTAAAGAAGTCAGTGGGTTACTTGGGAGTGATCAGCCTGACTC
TGAAATGACTTTTGATACCAACATAAAGCAAGAGTCTGGGTCTTCTACTTCTTCATACAGTGGCTATGAA
GGTTGTGCTGTGTTACAGGTCAGCCCAGTGACTGAAACACGTACTTACCATGATGTGAAAGAGATTTGCA
AATGCGATGTTGATGAATTTGTTATTTTAGAGCTTGGAGATTTTAATGATATCACAGAAACCTGTAGCTG
TTCCTGCAGCTCCTCTAAGAGTGTCACTTATGAGCCAGACTTCAATTCTGCAGAACTATTAGCCAAAGAG
CTGTACCGCGTGTTCCAGAAGTGCTGGATACTGTCAGTAGTTAATTCTCAGCTGGCAGGTTCCCTGAGTG
CAGCTGGCTCGATAGTCGTAAATGAAGAGTGTGTCCGAAAAGACTTTGAATCCAGTATGAATGTAGTACA
GGAAATTAAATTTAAGTCTAGGATCAGAGGGACTGAAGACTGGGCTCCTCCTAGATTTCAAATCATATTT
AATATTCATCCACCACTCAAGAGGGACCTTGTGGTGGCAGCCCAGAATTTTTTCTGTGCCGGCTGTGGAA
CTCCAGTAGAGCCTAAGTTTGTGAAGCGGCTCCGGTACTGCGAATACCTAGGGAAGTATTTCTGTGACTG
CTGCCACTCATATGCAGAGTCGTGCATCCCTGCCCGAATCCTGATGATGTGGGACTTCAAGAAGTACTAC
GTCAGCAATTTCTCCAAACAGCTGCTCGACAGCATATGGCACCAGCCCATTTTCAATTTGCTGAGCATCG
GCCAAAGCCTGTATGCGAAAGCCAAGGAGCTGGACAGAGTGAAGGAAATTCAGGAGCAGCTCTTCCATAT
CAAGAAGCTGTTGAAGACCTGTAGGTTTGCTAACAGTGCATTAAAGGAGTTCGAGCAGGTGCCGGGACAC
TTGACTGATGAGCTCCACCTGTTCTCCCTTGAGGACCTGGTCAGGATCAAGAAAGGGCTGCTGGCACCCT
TACTCAAGGACATTCTGAAAGCTTCCCTTGCACATGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTT
TATTTGTGAATTTTGCCAGAATACGACTGTCATCTTCCCATTTCAGACAGCAACATGTAGAAGATGTTCA
GCGTGCAGGGCTTGCTTTCACAAACAGTGCTTCCAGTCCTCCGAGTGCCCCCGGTGTGCGAGGATCACAG
CGAGGAGAAAACTTCTGGAAAGTGTGGCCTCTGCAGCAACATGA

Translation (527 aa):
MVRPGYSHRVSLPTSPGILATSPYPETDSAFFEPSHLTSAADEGAVQVSRRTISSNSFSPEVFVLPVDVE
KENAHFYVADMIISAMEKMKCNILSQQQTESWSKEVSGLLGSDQPDSEMTFDTNIKQESGSSTSSYSGYE
GCAVLQVSPVTETRTYHDVKEICKCDVDEFVILELGDFNDITETCSCSCSSSKSVTYEPDFNSAELLAKE
LYRVFQKCWILSVVNSQLAGSLSAAGSIVVNEECVRKDFESSMNVVQEIKFKSRIRGTEDWAPPRFQIIF
NIHPPLKRDLVVAAQNFFCAGCGTPVEPKFVKRLRYCEYLGKYFCDCCHSYAESCIPARILMMWDFKKYY
VSNFSKQLLDSIWHQPIFNLLSIGQSLYAKAKELDRVKEIQEQLFHIKKLLKTCRFANSALKEFEQVPGH
LTDELHLFSLEDLVRIKKGLLAPLLKDILKASLAHVAGCELCQGKGFICEFCQNTTVIFPFQTATCRRCS
ACRACFHKQCFQSSECPRCARITARRKLLESVASAAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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