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Report for CCDS66557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66557.1 Public Homo sapiens 13 CKAP2 24 110 108 CCDS HistoryNCBI Gene:26586Re-query CCDS DB by CCDS ID:66557.1Re-query CCDS DB by GeneID:26586See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000490903.5 ENSP00000417830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490903.5Link to Ensembl Protein Viewer:ENSP00000417830.1Re-query CCDS DB by Nucleotide ID:ENST00000490903Re-query CCDS DB by Protein ID:ENSP00000417830
Original member Current member NCBI NM_001286686.2 NP_001273615.1 Accepted alive Link to Nucleotide Sequence:NM_001286686.2Link to Protein Sequence:NP_001273615.1Re-query CCDS DB by Nucleotide ID:NM_001286686Re-query CCDS DB by Protein ID:NP_001273615Link to BLAST:NP_001273615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273615.1 634 Q8WWK9-6 634 100% 0 0

Chromosomal Locations for CCDS 66557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52456597 52456607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52460899 52460974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52461058 52461926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52462363 52462567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52465295 52465465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52468278 52468347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52473829 52474084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52474895 52475141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGTTATCCAGTAGAGATCAGAGAGTTGTGACATCTGAGGACCAAGTTCAAGAAGGGACTAAAGTGCTGA
AACTTAAAACAAAAATGGCTGATAAAGAAAACATGAAGAGACCTGCAGAGAGCAAAAATAATACAGTGGT
GGGGAAACATTGTATTCCTTTAAAACCTTCAAATGAACTAACCAATTCAACTGTAGTAATTGACACACAT
AAACCTAAGGATAGTAATCAAACTCCGCATTTGTTACTAACTGAAGATGATCCCCAAAGTCAACATATGA
CATTAAGCCAGGCATTTCACCTTAAAAACAATAGTAAAAAGAAACAAATGACTACAGAAAAACAAAAGCA
AGATGCTAACATGCCCAAGAAACCTGTGCTTGGATCTTATCGTGGCCAGATTGTTCAGTCTAAGATTAAT
TCATTTAGAAAACCTCTACAAGTCAAAGATGAGAGTTCTGCAGCAACAAAGAAACTTTCAGCCACTATAC
CTAAAGCCACAAAACCTCAGCCTGTAAACACCAGCAGTGTAACAGTGAAAAGTAATAGATCCTCCAATAT
GACTGCCACTACTAAATTTGTGAGCACTACATCTCAGAACACACAACTTGTGCGACCTCCTATTAGAAGT
CATCACAGTAATACCCGGGACACTGTGAAACAAGGCATCAGTAGAACTTCTGCCAATGTTACAATCCGGA
AAGGGCCTCATGAAAAAGAACTATTACAATCAAAAACAGCTTTATCTAGTGTCAAAACCAGTTCTTCTCA
AGGTATAATAAGAAATAAGACTCTATCAAGATCCATAGCATCTGAAGTTATAGCCAGGCCTGCTTCATTG
TCTAATGATAAACTGATGGAAAAGTCAGAGCCCGTTGACCAGCGAAGACATACTGCAGGAAAAGCAATTG
TTGATAGTAGATCAGCTCAGCCCAAAGAAACCTCGGAAGAGAGAAAAGCTCGTCTGAGTGAGTGGAAAGC
TGGCAAAGGAAGAGTGCTAAAAAGGCCCCCTAATTCAGTAGTTACTCAGCATGAGCCTGCAGGACAAAAT
GAAAAACCAGTTGGGTCTTTTTGGACTACCATGGCAGAAGAAGATGAACAAAGATTATTTACTGAAAAAG
TAAACAACACATTTTCTGAATGCCTGAACTTGATTAATGAGGGATGTCCAAAAGAAGATATACTGGTCAC
ACTGAATGACCTGATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATTGGATATGTCTTGCACTT
ATTGAACCAATCACAAGTCCTATTGAAAATATTATTGCAATCTATGAGAAAGCCATTCTGGCAGGGGCTC
AGCCTATTGAAGAGATGCGACACACGATTGTAGATATTCTAACAATGAAGAGTCAAGAAAAAGCTAATTT
AGGAGAAAATATGGAGAAGTCTTGTGCAAGCAAGGAAGAAGTCAAAGAAGTCAGTATTGAAGATACAGGT
GTTGATGTAGATCCAGAAAAACTGGAAATGGAGAGTAAACTTCATAGAAATTTGCTATTTCAAGATTGTG
AAAAAGAGCAAGACAACAAAACAAAAGATCCAACCCATGATGTTAAAACCCCCAATACAGAAACGAGGAC
AAGTTGCTTAATTAAATATAATGTGTCTACTACGCCATACTTGCAAAGTGTGAAAAAAAAGGTGCAGTTT
GATGGAACAAATTCCGCATTTAAAGAGCTGAAGTTTTTAACACCAGTGAGACGTTCTCGACGTCTTCAAG
AGAAAACTTCTAAATTGCCAGATATGTTAAAAGATCATTATCCTTGTGTGTCTTCATTGGAACAGCTAAC
GGAGTTGGGAAGAGAAACTGATGCTTTTGTATGCCGCCCTAATGCAGCACTGTGCCGGGTGTACTATGAG
GCTGATACAACATAA

Translation (634 aa):
MLSSRDQRVVTSEDQVQEGTKVLKLKTKMADKENMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVIDTH
KPKDSNQTPHLLLTEDDPQSQHMTLSQAFHLKNNSKKKQMTTEKQKQDANMPKKPVLGSYRGQIVQSKIN
SFRKPLQVKDESSAATKKLSATIPKATKPQPVNTSSVTVKSNRSSNMTATTKFVSTTSQNTQLVRPPIRS
HHSNTRDTVKQGISRTSANVTIRKGPHEKELLQSKTALSSVKTSSSQGIIRNKTLSRSIASEVIARPASL
SNDKLMEKSEPVDQRRHTAGKAIVDSRSAQPKETSEERKARLSEWKAGKGRVLKRPPNSVVTQHEPAGQN
EKPVGSFWTTMAEEDEQRLFTEKVNNTFSECLNLINEGCPKEDILVTLNDLIKNIPDAKKLVKYWICLAL
IEPITSPIENIIAIYEKAILAGAQPIEEMRHTIVDILTMKSQEKANLGENMEKSCASKEEVKEVSIEDTG
VDVDPEKLEMESKLHRNLLFQDCEKEQDNKTKDPTHDVKTPNTETRTSCLIKYNVSTTPYLQSVKKKVQF
DGTNSAFKELKFLTPVRRSRRLQEKTSKLPDMLKDHYPCVSSLEQLTELGRETDAFVCRPNAALCRVYYE
ADTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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