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Report for CCDS67144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
67144.1 Public Homo sapiens 17 PHF23 24 110 108 CCDS HistoryNCBI Gene:79142Re-query CCDS DB by CCDS ID:67144.1Re-query CCDS DB by GeneID:79142See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 67144.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000571362.5 ENSP00000460738.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000571362.5Link to Ensembl Protein Viewer:ENSP00000460738.1Re-query CCDS DB by Nucleotide ID:ENST00000571362Re-query CCDS DB by Protein ID:ENSP00000460738
Original member Current member NCBI NM_001284517.2 NP_001271446.1 Accepted alive Link to Nucleotide Sequence:NM_001284517.2Link to Protein Sequence:NP_001271446.1Re-query CCDS DB by Nucleotide ID:NM_001284517Re-query CCDS DB by Protein ID:NP_001271446Link to BLAST:NP_001271446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271446.1 336 Q9BUL5-3 336 100% 0 0

Chromosomal Locations for CCDS 67144.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7235626 7235840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7235930 7236566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7237385 7237477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7237629 7237660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7239246 7239279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGCTGGAAGCCATGGCGGAGCCCAGTCCCGAAGATCCACCTCCGACCCTTAAGCCAGAGACTCAGCCAC
CAGAGAAACGGCGGAGAACAATTGAGGATTTCAACAAATTCTGCAGTTTTGTTTTGGCATATGCTGGTTA
CATTCCCCCTAGCAAAGAGGCCCCCGACAGTGCTACCTTGCTTGAGAAGATGAAGCTCAAGGACTCTCTC
TTTGATCTGGATGGGCCCAAAGTGGCATCTCCTTTGTCCCCCACATCCCTGACACATACCTCCCGGCCCC
CTGCTGCTCTTACCCCCGTGCCCCTTTCCCAGGGGGACCTCTCCCATCCTCCTCGAAAGAAGGACCGAAA
GAACCGAAAGTTGGGGCCAGGAGCTGGGGCTGGCTTTGGGGTGCTTCGGAGGCCTCGGCCAACTCCTGGG
GATGGGGAAAAGAGATCTCGAATCAAGAAGAGCAAGAAGCGGAAGTTAAAAAAGGCAGAACGGGGGGATA
GACTCCCACCTCCTGGGCCTCCCCAGGCACCCCCCAGTGATACAGACTCTGAAGAGGAGGAGGAAGAGGA
GGAAGAGGAAGAAGAAGAAGAGATGGCAACAGTGGTAGGGGGTGAAGCCCCAGTCCCTGTGCTGCCAACA
CCCCCTGAGGCTCCTAGGCCCCCTGCCACAGTGCACCCTGAAGGAGTCCCTCCTGCTGACAGTGAAAGCA
AGGAGGTGGGCAGCACTGAAACAAGCCAAGATGGAGATGCCAGCTCCAGTGAAGGCGAGATGCGGGTCAT
GGACGAGGACATCATGGTAGAATCAGGTGATGACTCATGGGATCTGATCACATGTTACTGTCGAAAGCCC
TTTGCAGGGCGGCCCATGATTGAGTGCAGCCTGTGTGGGACGTGGATCCACCTCTCCTGTGCTAAGATTA
AGAAGACCAACGTCCCCGACTTCTTTTATTGCCAGAAATGCAAGGAACTGAGGCCAGAGGCCCGGCGGTT
AGGGGGGCCTCCCAAATCTGGAGAGCCCTGA

Translation (336 aa):
MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEAPDSATLLEKMKLKDSL
FDLDGPKVASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRKLGPGAGAGFGVLRRPRPTPG
DGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPT
PPEAPRPPATVHPEGVPPADSESKEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKP
FAGRPMIECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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