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Report for CCDS6723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6723.1 Public Homo sapiens 9 CTSV 24 110 108 CCDS HistoryNCBI Gene:1515Re-query CCDS DB by CCDS ID:6723.1Re-query CCDS DB by GeneID:1515See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259470.6 ENSP00000259470.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259470.6Link to Ensembl Protein Viewer:ENSP00000259470.5Re-query CCDS DB by Nucleotide ID:ENST00000259470Re-query CCDS DB by Protein ID:ENSP00000259470
Original member Current member EBI ENST00000681927.1 ENSP00000505141.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681927.1Link to Ensembl Protein Viewer:ENSP00000505141.1Re-query CCDS DB by Nucleotide ID:ENST00000681927Re-query CCDS DB by Protein ID:ENSP00000505141
Original member Current member EBI ENST00000681737.1 ENSP00000505681.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681737.1Link to Ensembl Protein Viewer:ENSP00000505681.1Re-query CCDS DB by Nucleotide ID:ENST00000681737Re-query CCDS DB by Protein ID:ENSP00000505681
Original member Current member EBI ENST00000679661.1 ENSP00000506713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679661.1Link to Ensembl Protein Viewer:ENSP00000506713.1Re-query CCDS DB by Nucleotide ID:ENST00000679661Re-query CCDS DB by Protein ID:ENSP00000506713
Original member Current member NCBI NM_001201575.2 NP_001188504.1 Accepted alive Link to Nucleotide Sequence:NM_001201575.2Link to Protein Sequence:NP_001188504.1Re-query CCDS DB by Nucleotide ID:NM_001201575Re-query CCDS DB by Protein ID:NP_001188504Link to BLAST:NP_001188504.1
Original member Current member NCBI NM_001333.4 NP_001324.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001333.4Link to Protein Sequence:NP_001324.2Re-query CCDS DB by Nucleotide ID:NM_001333Re-query CCDS DB by Protein ID:NP_001324Link to BLAST:NP_001324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188504.1 334 O60911 334 100% 0 0
NP_001324.2 334 O60911 334 100% 0 0

Chromosomal Locations for CCDS 6723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97032949 97033048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97034726 97034843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97035528 97035693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97036523 97036747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97037252 97037398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97037493 97037615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 97037918 97038043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAATCTTTCGCTCGTCCTGGCTGCCTTTTGCTTGGGAATAGCCTCCGCTGTTCCAAAATTTGACCAAA
ATTTGGATACAAAGTGGTACCAGTGGAAGGCAACACACAGAAGATTATATGGCGCGAATGAAGAAGGATG
GAGGAGAGCAGTGTGGGAAAAGAATATGAAAATGATTGAACTGCACAATGGGGAATACAGCCAAGGGAAA
CATGGCTTCACAATGGCCATGAATGCTTTTGGTGACATGACCAATGAAGAATTCAGGCAGATGATGGGTT
GCTTTCGAAACCAGAAATTCAGGAAGGGGAAAGTGTTCCGTGAGCCTCTGTTTCTTGATCTTCCCAAATC
TGTGGATTGGAGAAAGAAAGGCTACGTGACGCCAGTGAAGAATCAGAAACAGTGTGGTTCTTGTTGGGCT
TTTAGTGCGACTGGTGCTCTTGAAGGACAGATGTTCCGGAAAACTGGGAAACTTGTCTCACTGAGCGAGC
AGAATCTGGTGGACTGTTCGCGTCCTCAAGGCAATCAGGGCTGCAATGGTGGCTTCATGGCTAGGGCCTT
CCAGTATGTCAAGGAGAACGGAGGCCTGGACTCTGAGGAATCCTATCCATATGTAGCAGTGGATGAAATC
TGTAAGTACAGACCTGAGAATTCTGTTGCTAATGACACTGGCTTCACAGTGGTCGCACCTGGAAAGGAGA
AGGCCCTGATGAAAGCAGTCGCAACTGTGGGGCCCATCTCCGTTGCTATGGATGCAGGCCATTCGTCCTT
CCAGTTCTACAAATCAGGCATTTATTTTGAACCAGACTGCAGCAGCAAAAACCTGGATCATGGTGTTCTG
GTGGTTGGCTACGGCTTTGAAGGAGCAAATTCGAATAACAGCAAGTATTGGCTCGTCAAAAACAGCTGGG
GTCCAGAATGGGGCTCGAATGGCTATGTAAAAATAGCCAAAGACAAGAACAACCACTGTGGAATCGCCAC
AGCAGCCAGCTACCCCAATGTGTGA

Translation (334 aa):
MNLSLVLAAFCLGIASAVPKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGK
HGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWA
FSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEI
CKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVL
VVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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