NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6761.1 Public Homo sapiens 9 NIPSNAP3B 24 110 108 CCDS HistoryNCBI Gene:55335Re-query CCDS DB by CCDS ID:6761.1Re-query CCDS DB by GeneID:55335See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6761.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374762.4 ENSP00000363894.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374762.4Link to Ensembl Protein Viewer:ENSP00000363894.3Re-query CCDS DB by Nucleotide ID:ENST00000374762Re-query CCDS DB by Protein ID:ENSP00000363894
Original member Current member NCBI NM_018376.4 NP_060846.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018376.4Link to Protein Sequence:NP_060846.2Re-query CCDS DB by Nucleotide ID:NM_018376Re-query CCDS DB by Protein ID:NP_060846Link to BLAST:NP_060846.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060846.2 247 Q9BS92 247 100% 0 0

Chromosomal Locations for CCDS 6761.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104764241 104764300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104766325 104766535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104768863 104769021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104770849 104770998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104772822 104772908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104772997 104773073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTCGTTCTCAGAAGCGGCCTGACCAAGGCGCTTGCCTCACGGACGCTCGCGCCTCAGGTGTGTTCAT
CTTTTGCTACGGGCCCTAGACAATACGATGGAACGTTCTATGAATTTCGTACTTATTACCTTAAACCTTC
AAATATGAATGCGTTCATGGAAAATCTTAAGAAAAACATTCATCTTCGGACCTCTTACTCTGAATTGGTT
GGATTCTGGAGTGTAGAATTTGGAGGCAGAACGAATAAAGTGTTTCATATTTGGAAGTATGATAATTTTG
CTCATCGAGCTGAAGTTCGGAAAGCCTTAGCCAACTGTAAGGAATGGCAAGAACAATCTATCATTCCAAA
TTTGGCTCGCATTGATAAACAAGAGACGGAAATTACTTACCTGATACCATGGTCCAAATTAGAAAAGCCT
CCAAAAGAAGGAGTCTATGAACTAGCTGTTTTTCAGATGAAACCTGGTGGGCCAGCTCTGTGGGGTGATG
CATTTGAAAGAGCAATTAATGCCCATGTCAATTTAGGCTACACAAAAGTAGTTGGTGTTTTCCACACAGA
ATATGGAGAACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGGGAGA
CATAAGTCCCATGAGGATCCCAGAGTTGTGGCGGCTGTTCGGGAAAGTGTCAACTACCTAGTTTCTCAGC
AGAATATGCTTCTGATTCCTGCATCATTTTCACCATTGAAATAG

Translation (247 aa):
MLVLRSGLTKALASRTLAPQVCSSFATGPRQYDGTFYEFRTYYLKPSNMNAFMENLKKNIHLRTSYSELV
GFWSVEFGGRTNKVFHIWKYDNFAHRAEVRKALANCKEWQEQSIIPNLARIDKQETEITYLIPWSKLEKP
PKEGVYELAVFQMKPGGPALWGDAFERAINAHVNLGYTKVVGVFHTEYGELNRVHVLWWNESADSRAAGR
HKSHEDPRVVAAVRESVNYLVSQQNMLLIPASFSPLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH