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Report for CCDS6779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6779.1 Public Homo sapiens 9 PTGR1 24 110 108 CCDS HistoryNCBI Gene:22949Re-query CCDS DB by CCDS ID:6779.1Re-query CCDS DB by GeneID:22949See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309195.9 ENSP00000311572.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309195.9Link to Ensembl Protein Viewer:ENSP00000311572.5Re-query CCDS DB by Nucleotide ID:ENST00000309195Re-query CCDS DB by Protein ID:ENSP00000311572
Original member Current member EBI ENST00000407693.7 ENSP00000385763.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407693.7Link to Ensembl Protein Viewer:ENSP00000385763.2Re-query CCDS DB by Nucleotide ID:ENST00000407693Re-query CCDS DB by Protein ID:ENSP00000385763
Original member Current member NCBI NM_001146108.2 NP_001139580.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146108.2Link to Protein Sequence:NP_001139580.1Re-query CCDS DB by Nucleotide ID:NM_001146108Re-query CCDS DB by Protein ID:NP_001139580Link to BLAST:NP_001139580.1
Original member Current member NCBI NM_012212.3 NP_036344.2 Accepted alive Link to Nucleotide Sequence:NM_012212.3Link to Protein Sequence:NP_036344.2Re-query CCDS DB by Nucleotide ID:NM_012212Re-query CCDS DB by Protein ID:NP_036344Link to BLAST:NP_036344.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139580.1 329 Q14914-1 329 100% 0 0
NP_036344.2 329 Q14914-1 329 100% 0 0

Chromosomal Locations for CCDS 6779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 111563121 111563231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111570091 111570209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111574734 111574842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111578796 111578951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111583472 111583589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111585998 111586165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111592926 111592982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111594222 111594267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 111597317 111597422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGTTCGTACTAAGACATGGACCCTGAAGAAGCACTTTGTTGGCTATCCTACTAATAGTGACTTTGAGT
TGAAGACAGCTGAGCTCCCACCCTTAAAAAATGGAGAGGTCCTGCTTGAAGCTTTGTTCCTCACCGTGGA
TCCCTACATGAGAGTGGCAGCCAAAAGATTGAAGGAAGGTGATACAATGATGGGGCAGCAAGTGGCCAAA
GTTGTGGAAAGTAAAAATGTAGCCCTACCAAAAGGAACTATTGTACTGGCTTCTCCAGGCTGGACAACGC
ACTCCATTTCTGATGGGAAAGATCTGGAAAAGCTGCTGACAGAGTGGCCAGACACAATACCACTGTCTTT
GGCTCTGGGGACAGTTGGCATGCCAGGCCTGACTGCCTACTTTGGCCTACTTGAAATCTGTGGTGTGAAG
GGTGGAGAAACAGTGATGGTTAATGCAGCAGCTGGAGCTGTGGGCTCAGTCGTGGGGCAGATTGCAAAGC
TCAAGGGCTGCAAAGTTGTTGGAGCAGTAGGGTCTGATGAAAAGGTTGCCTACCTTCAAAAGCTTGGATT
TGATGTCGTCTTTAACTACAAGACGGTAGAGTCTTTGGAAGAAACCTTGAAGAAAGCGTCTCCTGATGGT
TATGATTGTTATTTTGATAATGTAGGTGGAGAGTTTTCAAACACTGTTATCGGCCAGATGAAGAAATTTG
GAAGGATTGCCATATGTGGAGCCATCTCTACATATAACAGAACCGGCCCACTTCCCCCAGGCCCACCCCC
AGAGATTGTTATCTATCAGGAGCTTCGCATGGAAGCTTTTGTCGTCTACCGCTGGCAAGGAGATGCCCGC
CAAAAAGCTCTGAAGGACTTGCTGAAATGGGTCTTAGAGGGTAAAATCCAGTACAAGGAATATATCATTG
AAGGATTTGAAAACATGCCAGCTGCATTTATGGGAATGCTGAAAGGAGATAATTTGGGGAAGACAATAGT
GAAAGCATGA

Translation (329 aa):
MVRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAK
VVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVK
GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDG
YDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDAR
QKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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