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Report for CCDS6845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6845.1 Public Homo sapiens 9 PDCL 24 110 108 CCDS HistoryNCBI Gene:5082Re-query CCDS DB by CCDS ID:6845.1Re-query CCDS DB by GeneID:5082See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259467.9 ENSP00000259467.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259467.9Link to Ensembl Protein Viewer:ENSP00000259467.4Re-query CCDS DB by Nucleotide ID:ENST00000259467Re-query CCDS DB by Protein ID:ENSP00000259467
Original member Current member NCBI NM_005388.5 NP_005379.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005388.5Link to Protein Sequence:NP_005379.3Re-query CCDS DB by Nucleotide ID:NM_005388Re-query CCDS DB by Protein ID:NP_005379Link to BLAST:NP_005379.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005379.3 301 Q13371-1 301 100% 0 0

Chromosomal Locations for CCDS 6845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122820085 122820636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122823016 122823197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122826616 122826787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGACCACCCTTGATGATAAGTTGCTGGGGGAGAAACTGCAGTACTACTATAGCAGCAGTGAGGATGAGG
ACAGTGACCACGAGGACAAGGACCGAGGCAGATGTGCCCCAGCCAGCAGTTCTGTGCCTGCAGAGGCTGA
GCTGGCAGGCGAAGGCATCTCAGTTAACACAGGCCCAAAAGGTGTGATCAATGACTGGCGCCGCTTCAAG
CAGTTGGAGACAGAGCAGAGGGAGGAGCAGTGCCGGGAGATGGAAAGGCTGATCAAGAAGCTGTCAATGA
CTTGCAGGTCCCATCTGGATGAAGAGGAGGAGCAACAGAAACAGAAAGACCTCCAGGAGAAGATCAGTGG
GAAGATGACTCTGAAGGAGTTTGCCATAATGAATGAGGACCAAGATGATGAAGAGTTTCTGCAGCAGTAC
CGGAAGCAGCGAATGGAAGAGATGCGGCAGCAGCTTCACAAGGGGCCCCAATTCAAGCAGGTTTTTGAGA
TCTCCAGTGGAGAAGGGTTTTTAGACATGATTGATAAAGAACAGAAAAGCATTGTCATCATGGTTCATAT
TTATGAGGATGGCATTCCAGGGACCGAAGCCATGAATGGTTGCATGATCTGCCTTGCCGCAGAGTACCCA
GCTGTCAAGTTCTGCAAGGTGAAGAGCTCAGTTATTGGCGCCAGCAGTCAGTTCACCAGGAATGCCCTTC
CTGCCCTGCTGATCTATAAGGGGGGTGAATTGATCGGCAATTTTGTTCGTGTTACTGACCAGCTGGGGGA
TGATTTCTTTGCTGTGGACCTTGAAGCTTTTCTCCAGGAATTTGGATTACTCCCAGAAAAGGAAGTCTTG
GTGCTGACATCTGTGCGTAACTCTGCCACGTGTCACAGTGAGGATAGCGACCTGGAAATAGATTGA

Translation (301 aa):
MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRCAPASSSVPAEAELAGEGISVNTGPKGVINDWRRFK
QLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAIMNEDQDDEEFLQQY
RKQRMEEMRQQLHKGPQFKQVFEISSGEGFLDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYP
AVKFCKVKSSVIGASSQFTRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLLPEKEVL
VLTSVRNSATCHSEDSDLEID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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