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Report for CCDS6848.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6848.2 Public Homo sapiens 9 RABGAP1 24 110 108 CCDS HistoryNCBI Gene:23637Re-query CCDS DB by CCDS ID:6848.2Re-query CCDS DB by GeneID:23637See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6848.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373647.9 ENSP00000362751.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373647.9Link to Ensembl Protein Viewer:ENSP00000362751.4Re-query CCDS DB by Nucleotide ID:ENST00000373647Re-query CCDS DB by Protein ID:ENSP00000362751
Original member Current member NCBI NM_012197.4 NP_036329.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012197.4Link to Protein Sequence:NP_036329.3Re-query CCDS DB by Nucleotide ID:NM_012197Re-query CCDS DB by Protein ID:NP_036329Link to BLAST:NP_036329.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036329.3 1069 Q9Y3P9-1 1069 100% 0 0

Chromosomal Locations for CCDS 6848.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122957060 122957209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122984485 122984719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122986215 122986419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122989297 122989471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122990056 122990213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122996041 122996151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122996539 122996605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122997259 122997361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122998597 122998766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123010354 123010528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123015543 123015636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123020309 123020459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123065348 123065461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123070350 123070424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123073552 123073677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123074285 123074428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123076245 123076286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123076634 123076762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123089758 123089850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123090275 123090385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123097741 123097845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123098715 123098798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123099478 123099549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123101566 123101763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123103091 123103213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAG
ATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAAC
AGGACTCAAGATTGTAGGGAATGGAAGTGAACAGCAGCTGCAAAAAGAGCTAGCAGATGTACTGATGGAT
CCTCCAATGGACGACCAGCCAGGGGAAAAGGAGCTTGTGAAAAGGTCACAACTGGATGGTGAAGGAGATG
GGCCTCTTTCTAATCAGCTCTCCGCTTCATCCACCATTAACCCTGTGCCATTAGTAGGGCTCCAAAAACC
AGAGATGAGCCTACCAGTGAAACCTGGACAAGGAGATTCTGAAGCTTCAAGTCCTTTCACACCAGTGGCC
GATGAGGACAGCGTAGTTTTCAGTAAACTGACTTACTTAGGCTGTGCCTCGGTAAATGCTCCCAGGAGTG
AAGTGGAAGCCTTAAGGATGATGTCCATCTTAAGAAGCCAGTGTCAGATTTCACTAGATGTTACCCTTTC
AGTGCCGAATGTGTCTGAAGGAATTGTGAGACTCTTAGATCCTCAGACAAACACTGAAATAGCAAACTAC
CCTATCTACAAAATCCTCTTCTGTGTCAGAGGGCATGATGGAACTCCTGAGAGTGACTGTTTTGCTTTCA
CTGAAAGTCATTACAATGCAGAGCTCTTCAGAATACACGTCTTCCGGTGTGAAATACAAGAAGCTGTAAG
CCGGATACTTTACAGTTTTGCCACTGCCTTCCGCCGTTCTGCCAAGCAGACCCCACTTTCAGCCACTGCT
GCACCCCAGACTCCTGACAGTGACATCTTTACCTTCTCTGTGTCTTTAGAAATAAAAGAAGATGATGGTA
AAGGTTATTTTAGTGCAGTTCCCAAAGATAAGGACAGACAGTGCTTTAAACTACGCCAAGGAATTGATAA
GAAGATTGTCATCTATGTGCAGCAAACAACTAATAAAGAACTTGCCATTGAAAGGTGTTTTGGTCTTCTC
CTTAGTCCAGGAAAAGATGTACGAAATAGTGACATGCACTTATTAGATTTGGAATCTATGGGCAAAAGTT
CAGATGGAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGA
AGAAACTCCTAAAGATAAAGTCCTGTTTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAG
CCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCA
GCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAGATAAAGCAAAGGGAGAGAAAGAATAA
TACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAACTACAGCC
AGTCCTTCAGTTCGCCTGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCAGAAGATGATG
AAGAGGAAGATAATGATGAACCTCTCCTGAGTGGATCTGGTGATGTATCCAAAGAATGTGCAGAAAAAAT
TCTTGAAACATGGGGAGAACTGTTGTCAAAATGGCATCTCAACTTGAATGTGAGACCGAAGCAGTTGTCA
TCCTTAGTAAGAAACGGTGTCCCTGAAGCTCTTCGAGGAGAAGTCTGGCAGCTGCTAGCAGGCTGTCATA
ACAATGACCACCTGGTAGAGAAATACCGCATTCTTATCACAAAGGAGTCTCCCCAGGACAGTGCTATCAC
CCGGGATATTAACCGAACATTCCCAGCCCATGACTACTTTAAGGACACAGGAGGAGATGGACAAGATTCC
TTATATAAAATATGCAAGGCTTATTCTGTGTATGATGAAGAGATTGGTTATTGCCAGGGCCAGTCATTTC
TTGCTGCTGTGCTCCTTCTCCATATGCCTGAAGAACAGGCATTCAGTGTTCTGGTCAAGATCATGTTTGA
CTATGGGCTCAGGGAACTTTTCAAGCAAAACTTCGAAGATTTGCATTGCAAATTTTACCAGTTGGAGCGC
CTCATGCAGGAATACATTCCTGACCTGTACAACCACTTCCTGGATATAAGCCTTGAAGCACACATGTATG
CCTCCCAGTGGTTTCTTACTCTTTTCACTGCAAAATTCCCTCTCTACATGGTCTTCCATATCATCGACCT
GCTTTTATGTGAGGGAATAAGTGTTATTTTTAATGTCGCCCTTGGATTATTAAAGACTTCGAAAGATGAC
CTGCTGTTGACAGACTTTGAAGGTGCCTTGAAGTTCTTTAGGGTTCAGCTTCCTAAGAGATACCGCTCAG
AAGAAAATGCAAAAAAACTAATGGAATTAGCCTGCAACATGAAGATTAGTCAGAAGAAGTTGAAAAAATA
CGAGAAAGAATATCACACCATGAGGGAACAGCAGGCCCAGCAAGAAGACCCCATCGAGCGATTTGAGCGG
GAGAATAGGCGTCTACAAGAAGCTAACATGAGGTTGGAACAGGAAAACGATGACTTAGCCCATGAGCTGG
TGACCAGCAAGATTGCACTACGGAAGGACCTGGATAACGCTGAGGAAAAGGCAGATGCTCTGAATAAGGA
GCTGCTGATGACCAAACAGAAGTTGATTGATGCAGAAGAAGAGAAAAGACGGCTGGAAGAAGAGTCTGCT
CAGTTAAAAGAAATGTGCCGTCGGGAACTCGACAAGGCAGAATCTGAGATTAAAAAAAACAGTTCTATCA
TTGGTGACTATAAGCAGATTTGTTCTCAGTTGAGTGAAAGATTGGAGAAGCAGCAGACAGCCAATAAGGT
GGAAATTGAGAAAATTCGGCAAAAAGTGGATGACTGTGAGCGGTGCCGGGAATTTTTCAACAAAGAAGGG
CGTGTAAAAGGCATAAGCTCAACCAAGGAGGTTTTAGATGAGGACACGGATGAAGAGAAAGAGACGCTCA
AGAACCAGCTGAGAGAAATGGAGCTAGAACTGGCACAGACCAAACTCCAGCTGGTGGAGGCCGAGTGTAA
GATACAGGACTTGGAACACCATTTAGGGCTTGCCCTCAATGAGGTGCAGGCAGCCAAGAAGACGTGGTTT
AACCGAACACTGAGCTCCATAAAGACAGCAACCGGGGTTCAAGGGAAAGAGACTTGCTGA

Translation (1069 aa):
MDDKASVGKISVSSDSVSTLNSEDFVLVSRQGDETPSTNNGSDDEKTGLKIVGNGSEQQLQKELADVLMD
PPMDDQPGEKELVKRSQLDGEGDGPLSNQLSASSTINPVPLVGLQKPEMSLPVKPGQGDSEASSPFTPVA
DEDSVVFSKLTYLGCASVNAPRSEVEALRMMSILRSQCQISLDVTLSVPNVSEGIVRLLDPQTNTEIANY
PIYKILFCVRGHDGTPESDCFAFTESHYNAELFRIHVFRCEIQEAVSRILYSFATAFRRSAKQTPLSATA
APQTPDSDIFTFSVSLEIKEDDGKGYFSAVPKDKDRQCFKLRQGIDKKIVIYVQQTTNKELAIERCFGLL
LSPGKDVRNSDMHLLDLESMGKSSDGKSYVITGSWNPKSPHFQVVNEETPKDKVLFMTTAVDLVITEVQE
PVRFLLETKVRVCSPNERLFWPFSKRSTTENFFLKLKQIKQRERKNNTDTLYEVVCLESESERERRKTTA
SPSVRLPQSGSQSSVIPSPPEDDEEEDNDEPLLSGSGDVSKECAEKILETWGELLSKWHLNLNVRPKQLS
SLVRNGVPEALRGEVWQLLAGCHNNDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDS
LYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRELFKQNFEDLHCKFYQLER
LMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDD
LLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQKKLKKYEKEYHTMREQQAQQEDPIERFER
ENRRLQEANMRLEQENDDLAHELVTSKIALRKDLDNAEEKADALNKELLMTKQKLIDAEEEKRRLEEESA
QLKEMCRRELDKAESEIKKNSSIIGDYKQICSQLSERLEKQQTANKVEIEKIRQKVDDCERCREFFNKEG
RVKGISSTKEVLDEDTDEEKETLKNQLREMELELAQTKLQLVEAECKIQDLEHHLGLALNEVQAAKKTWF
NRTLSSIKTATGVQGKETC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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