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Report for CCDS685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
685.1 Public Homo sapiens 1 GIPC2 24 110 108 CCDS HistoryNCBI Gene:54810Re-query CCDS DB by CCDS ID:685.1Re-query CCDS DB by GeneID:54810See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 685.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370759.4 ENSP00000359795.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370759.4Link to Ensembl Protein Viewer:ENSP00000359795.3Re-query CCDS DB by Nucleotide ID:ENST00000370759Re-query CCDS DB by Protein ID:ENSP00000359795
Original member Current member NCBI NM_017655.6 NP_060125.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017655.6Link to Protein Sequence:NP_060125.4Re-query CCDS DB by Nucleotide ID:NM_017655Re-query CCDS DB by Protein ID:NP_060125Link to BLAST:NP_060125.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060125.4 315 Q8TF65 315 100% 0 0

Chromosomal Locations for CCDS 685.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78046095 78046334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78080675 78080860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78094952 78095132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78119393 78119499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78125881 78125962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78135592 78135743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCCCCTGAAGCTGCGGGGGAAGAAGAAGGCCAAGTCCAAGGAGACCGCCGGGCTGGTGGAGGGCGAGC
CGACGGGCGCGGGCGGCGGGAGCCTCTCAGCGTCCCGGGCTCCCGCACGCAGGCTGGTCTTCCACGCGCA
GCTGGCGCACGGTAGTGCCACGGGCCGAGTGGAGGGCTTCTCCAGCATCCAGGAGCTCTACGCCCAGATC
GCGGGCGCGTTTGAAATCTCGCCGTCGGAGATCTTATATTGCACTTTAAACACACCTAAAATTGACATGG
AAAGACTCTTAGGAGGACAACTAGGACTAGAAGATTTCATATTTGCCCATGTGAAAGGAATCGAAAAAGA
AGTGAATGTGTATAAATCTGAGGATTCACTTGGTCTCACCATTACAGATAATGGTGTTGGCTATGCTTTT
ATAAAGAGAATTAAAGATGGTGGTGTTATTGACTCAGTTAAAACAATCTGTGTTGGGGATCATATTGAAT
CCATAAATGGAGAAAATATTGTTGGGTGGCGTCACTATGATGTTGCTAAGAAGTTAAAGGAATTAAAAAA
GGAGGAACTCTTTACTATGAAGTTAATAGAACCTAAGAAGGCATTTGAAATAGAGCTGAGGTCAAAGGCT
GGAAAGTCATCAGGAGAAAAAATTGGTTGTGGAAGGGCAACACTTCGCCTGAGATCAAAAGGTCCTGCCA
CCGTGGAAGAAATGCCTTCTGAAACCAAAGCAAAGGCAATTGAAAAGATTGATGATGTTCTTGAGTTGTA
CATGGGAATTCGAGATATTGATTTAGCCACCACAATGTTTGAAGCTGGAAAGGACAAAGTAAATCCAGAT
GAATTTGCTGTGGCACTTGACGAAACTCTTGGAGACTTTGCGTTCCCAGACGAATTTGTCTTTGATGTTT
GGGGAGTCATTGGTGATGCCAAACGAAGAGGATTATGA

Translation (315 aa):
MPLKLRGKKKAKSKETAGLVEGEPTGAGGGSLSASRAPARRLVFHAQLAHGSATGRVEGFSSIQELYAQI
AGAFEISPSEILYCTLNTPKIDMERLLGGQLGLEDFIFAHVKGIEKEVNVYKSEDSLGLTITDNGVGYAF
IKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFEIELRSKA
GKSSGEKIGCGRATLRLRSKGPATVEEMPSETKAKAIEKIDDVLELYMGIRDIDLATTMFEAGKDKVNPD
EFAVALDETLGDFAFPDEFVFDVWGVIGDAKRRGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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