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Report for CCDS6873.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
6873.1 |
Public |
Homo sapiens |
9 |
LRSAM1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:90678](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:6873.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:90678](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 9 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 6873.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000300417.11 |
ENSP00000300417.6 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000300417.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000300417.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000300417](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000300417](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000323301.8 |
ENSP00000322937.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000323301.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000322937.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000323301](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000322937](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000373322.1 |
ENSP00000362419.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000373322.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000362419.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000373322](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000362419](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000675448.1 |
ENSP00000502167.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000675448.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000502167.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000675448](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000502167](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001005373.4 |
NP_001005373.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001005373.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001005373.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001005373](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001005373](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001005373.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001005374.4 |
NP_001005374.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001005374.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001005374.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001005374](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001005374](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001005374.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001384142.1 |
NP_001371071.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001384142.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001371071.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001384142](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001371071](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001371071.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_138361.5 |
NP_612370.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_138361.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_612370.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_138361](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_612370](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_612370.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 6873.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2172 nt): ATGCCGCTCTTCTTCCGGAAGCGGAAACCCAGTGAGGAGGCTCGGAAACGCCTGGAGTACCAGATGTGTT TGGCAAAAGAAGCTGGGGCAGATGACATTCTCGACATCTCTAAATGTGAGCTCTCAGAGATTCCATTTGG AGCTTTTGCAACATGCAAAGTTCTGCAGAAGAAGGTGCTGATCGTCCACACGAATCACCTCACTTCCCTG CTTCCCAAATCCTGCAGCCTCCTGAGTCTGGCAACCATCAAGGTTCTAGATCTCCACGATAATCAGCTGA CAGCCCTTCCTGACGATCTGGGGCAGCTGACTGCCCTCCAGGTCTTAAACGTGGAAAGGAATCAACTGAT GCAGCTCCCACGTTCCATTGGGAACCTGACCCAGCTCCAGACTCTCAATGTTAAAGACAACAAGCTGAAG GAGCTTCCAGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACATCAGTGGAAACGAGATCCAGA GATTGCCGCAGATGCTGGCTCACGTTCGAACCCTGGAGATGCTGAGCCTTGACGCCTCGGCCATGGTCTA CCCGCCGCGGGAGGTGTGTGGTGCCGGCACTGCGGCCATCTTGCAGTTCCTCTGCAAAGAGTCAGGGCTG GAATACTACCCCCCTTCTCAGTACTTGCTGCCAATTCTGGAGCAAGATGGAATCGAGAACTCTCGGGACA GCCCTGATGGGCCCACGGACAGATTCTCAAGGGAGGAGTTAGAGTGGCAGAACAGGTTCTCAGACTATGA GAAGAGGAAGGAACAGAAGATGCTGGAGAAACTCGAGTTTGAACGGCGCCTGGAACTGGGGCAGCGGGAG CACACCCAGCTCCTTCAGCAGAGCAGCAGCCAGAAGGATGAGATCCTTCAGACGGTCAAGGAGGAGCAGT CCCGGCTGGAGCAGGGCCTGAGTGAGCACCAGCGCCACCTCAACGCAGAGCGGCAGCGGCTGCAGGAGCA GCTGAAGCAGACGGAACAGAACATTTCCAGCCGGATCCAGAAGCTGCTGCAGGACAATCAGAGACAAAAG AAAAGCTCCGAGATTTTGAAATCGCTGGAAAATGAAAGAATAAGAATGGAACAGTTGATGTCCATAACCC AGGAGGAGACTGAGAGCCTGCGGCGACGTGACGTTGCCTCCGCCATGCAGCAGATGCTGACTGAGAGCTG TAAGAACCGGCTCATCCAGATGGCCTACGAATCTCAGAGGCAGAACTTGGTCCAGCAGGCCTGTTCCAGC ATGGCCGAAATGGATGAACGATTCCAGCAGATTCTGTCGTGGCAGCAAATGGATCAGAACAAAGCCATCA GCCAGATCCTGCAGGAGAGCGCGATGCAGAAGGCTGCGTTCGAGGCACTCCAGGTGAAGAAAGACCTGAT GCATCGGCAGATCAGGAGCCAGATTAAGTTAATAGAAACTGAGTTATTGCAGCTGACACAGCTGGAGTTA AAGAGGAAGTCCCTGGACACAGAGTCACTCCAGGAGATGATCTCGGAGCAGCGCTGGGCCCTCAGCTCCC TGCTCCAGCAGCTGCTCAAAGAGAAGCAGCAGCGAGAGGAAGAGCTCCGGGAAATCCTGACGGAGTTAGA AGCCAAAAGTGAAACCAGGCAGGAAAATTACTGGCTGATTCAGTATCAACGGCTTTTGAACCAGAAGCCC TTGTCCTTGAAGCTGCAAGAAGAGGGGATGGAGCGCCAGCTGGTGGCCCTCCTGGAGGAGCTGTCGGCTG AGCACTACCTGCCCATCTTTGCGCACCACCGCCTCTCACTGGACCTGCTGAGCCAAATGAGCCCAGGGGA CCTGGCCAAGGTGGGCGTCTCAGAAGCTGGCCTGCAGCACGAGATCCTCCGGAGAGTCCAGGAACTGCTG GATGCAGCCAGGATCCAGCCAGAGCTGAAACCACCAATGGGTGAGGTCGTCACCCCTACGGCCCCCCAGG AGCCTCCTGAGTCTGTGAGGCCATCCGCTCCCCCTGCAGAGCTGGAGGTGCAGGCCTCAGAGTGTGTCGT GTGCCTGGAACGGGAGGCCCAGATGATCTTCCTCAACTGTGGCCACGTCTGCTGCTGCCAGCAGTGCTGC CAGCCACTGCGCACCTGCCCGCTGTGCCGCCAGGACATCGCCCAGCGCCTCCGCATCTACCACAGCAGCT GA
Translation (723 aa): MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEIPFGAFATCKVLQKKVLIVHTNHLTSL LPKSCSLLSLATIKVLDLHDNQLTALPDDLGQLTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLK ELPDTVGELRSLRTLNISGNEIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFLCKESGL EYYPPSQYLLPILEQDGIENSRDSPDGPTDRFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLELGQRE HTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQNISSRIQKLLQDNQRQK KSSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQMLTESCKNRLIQMAYESQRQNLVQQACSS MAEMDERFQQILSWQQMDQNKAISQILQESAMQKAAFEALQVKKDLMHRQIRSQIKLIETELLQLTQLEL KRKSLDTESLQEMISEQRWALSSLLQQLLKEKQQREEELREILTELEAKSETRQENYWLIQYQRLLNQKP LSLKLQEEGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMSPGDLAKVGVSEAGLQHEILRRVQELL DAARIQPELKPPMGEVVTPTAPQEPPESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCC QPLRTCPLCRQDIAQRLRIYHSS
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