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Report for CCDS6941.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6941.2 Public Homo sapiens 9 FAM78A 24 110 108 CCDS HistoryNCBI Gene:286336Re-query CCDS DB by CCDS ID:6941.2Re-query CCDS DB by GeneID:286336See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6941.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372271.4 ENSP00000361345.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372271.4Link to Ensembl Protein Viewer:ENSP00000361345.3Re-query CCDS DB by Nucleotide ID:ENST00000372271Re-query CCDS DB by Protein ID:ENSP00000361345
Original member Current member EBI ENST00000704762.1 ENSP00000516028.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704762.1Link to Ensembl Protein Viewer:ENSP00000516028.1Re-query CCDS DB by Nucleotide ID:ENST00000704762Re-query CCDS DB by Protein ID:ENSP00000516028
Original member Current member NCBI NM_001399459.1 NP_001386388.1 Accepted alive Link to Nucleotide Sequence:NM_001399459.1Link to Protein Sequence:NP_001386388.1Re-query CCDS DB by Nucleotide ID:NM_001399459Re-query CCDS DB by Protein ID:NP_001386388Link to BLAST:NP_001386388.1
Original member Current member NCBI NM_001400581.1 NP_001387510.1 Accepted alive Link to Nucleotide Sequence:NM_001400581.1Link to Protein Sequence:NP_001387510.1Re-query CCDS DB by Nucleotide ID:NM_001400581Re-query CCDS DB by Protein ID:NP_001387510Link to BLAST:NP_001387510.1
Original member Current member NCBI NM_033387.4 NP_203745.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033387.4Link to Protein Sequence:NP_203745.2Re-query CCDS DB by Nucleotide ID:NM_033387Re-query CCDS DB by Protein ID:NP_203745Link to BLAST:NP_203745.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001386388.1 283 Q5JUQ0 283 100% 0 0
NP_001387510.1 283 Q5JUQ0 283 100% 0 0
NP_203745.2 283 Q5JUQ0 283 100% 0 0

Chromosomal Locations for CCDS 6941.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 131260822 131261350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 131275857 131276179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCCTGGTTTTTTCTGTGACTGCTGGCCTTCCCTGGAGATCAGAGCGCTCCTGTATGCCATGGGCTGTA
TTCAGAGCATCGGAGGCAAAGCCAGAGTCTTCCGGGAAGGGATCACGGTGATTGATGTGAAAGCCTCCAT
CGACCCCGTCCCCACTAGCATCGATGAGTCCTCCAGCGTGGTGCTCCGCTACCGGACACCCCACTTCCGG
GCCTCGGCCCAGGTGGTCATGCCGCCCATCCCCAAGAAGGAGACTTGGGTAGTTGGCTGGATCCAGGCGT
GCAGCCACATGGAGTTCTACAACCAGTACGGCGAGCAGGGCATGTCCAGCTGGGAGCTCCCCGACCTCCA
GGAGGGCAAGATCCAAGCCATCAGCGACTCGGATGGGGTGAACTACCCCTGGTACGGCAACACCACAGAG
ACCTGCACCATCGTGGGCCCCACCAAGAGGGACTCCAAGTTCATCATCAGCATGAATGACAACTTTTACC
CCAGCGTCACATGGGCCGTGCCCGTCAGCGAGAGCAACGTGGCCAAGCTCACCAATATCTACCGGGACCA
GAGCTTCACCACCTGGCTGGTGGCCACCAACACCTCCACCAACGACATGATCATCCTGCAGACGCTGCAC
TGGCGCATGCAGCTCAGCATCGAGGTGAACCCCAACCGGCCCCTGGGCCAGCGCGCCCGGCTGCGGGAGC
CCATCGCCCAGGACCAGCCCAAAATCCTGAGCAAGAATGAGCCCATCCCGCCCAGCGCCCTGGTCAAGCC
CAATGCCAACGATGCCCAGGTCCTCATGTGGCGGCCCAAGTACGGGCAGCCGCTGGTGGTGATCCCGCCC
AAGCACCGGTGA

Translation (283 aa):
MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFR
ASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTE
TCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLH
WRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPP
KHR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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