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Report for CCDS6948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6948.1 Public Homo sapiens 9 TTF1 24 110 108 CCDS HistoryNCBI Gene:7270Re-query CCDS DB by CCDS ID:6948.1Re-query CCDS DB by GeneID:7270See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334270.3 ENSP00000333920.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334270.3Link to Ensembl Protein Viewer:ENSP00000333920.2Re-query CCDS DB by Nucleotide ID:ENST00000334270Re-query CCDS DB by Protein ID:ENSP00000333920
Original member Current member NCBI NM_007344.4 NP_031370.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007344.4Link to Protein Sequence:NP_031370.2Re-query CCDS DB by Nucleotide ID:NM_007344Re-query CCDS DB by Protein ID:NP_031370Link to BLAST:NP_031370.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031370.2 905 Q15361 905 100% 0 0

Chromosomal Locations for CCDS 6948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132375915 132376168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132379059 132379144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132386556 132386621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132388139 132388228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132390597 132390831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132392076 132392206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132396433 132396511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132398141 132398326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132400035 132400258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132401455 132402821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGGAAGGAGAATCAAGCAGATTTGAAATCCACACTCCAGTTTCTGACAAGAAAAAGAAAAAGTGTTCTA
TACATAAGGAAAGACCTCAGAAACATTCCCACGAAATTTTCAGAGACTCCTCCCTGGTGAATGAACAGTC
TCAAATAACTAGGAGGAAAAAGAGGAAAAAAGATTTCCAGCATCTCATTTCTTCTCCTTTGAAAAAATCC
AGAATCTGTGATGAGACTGCAAATGCCACTTCCACACTCAAAAAGAGAAAAAAGAGAAGATATAGTGCTT
TGGAGGTGGACGAGGAAGCAGGTGTTACAGTTGTCCTTGTGGATAAAGAAAATATTAACAACACACCAAA
GCATTTTAGAAAGGATGTTGATGTTGTTTGTGTTGATATGAGCATAGAACAGAAGTTACCAAGAAAGCCT
AAAACAGACAAATTTCAGGTACTTGCTAAGTCACATGCACATAAATCAGAAGCCCTGCACAGTAAAGTTA
GGGAGAAAAAGAATAAAAAGCATCAGAGGAAAGCTGCATCCTGGGAGAGCCAGCGGGCAAGGGACACCCT
GCCTCAGTCAGAATCCCACCAGGAGGAGTCCTGGCTTTCTGTGGGTCCAGGGGGTGAAATTACAGAACTA
CCAGCATCTGCTCATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAGTAACCGGGAATATGAGACAC
TGGCCATGCCTGAAGGATCGCAAGCAGGCAGAGAGGCCGGGACTGATATGCAGGAATCCCAGCCTACTGT
GGGCTTGGATGATGAAACTCCACAACTACTAGGACCTACTCACAAAAAAAAGTCTAAGAAAAAAAAGAAG
AAAAAGTCCAATCACCAGGAATTTGAGGCATTGGCCATGCCTGAAGGATCACAAGTGGGCAGTGAGGTTG
GGGCTGATATGCAGGAATCCCGGCCTGCTGTGGGCCTGCATGGTGAAACTGCAGGAATACCAGCACCTGC
TTATAAAAACAAGTCTAAGAAAAAAAAGAAAAAGTCCAATCACCAGGAATTTGAGGCAGTGGCCATGCCT
GAGAGCCTCGAGAGTGCATACCCTGAAGGATCACAGGTGGGCAGTGAGGTTGGGACTGTGGAAGGCAGTA
CAGCTCTTAAAGGGTTCAAGGAATCCAACAGTACAAAGAAGAAGTCTAAGAAAAGGAAGCTTACGTCTGT
CAAAAGGGCACGAGTGTCTGGTGATGATTTTTCAGTGCCCAGTAAGAACTCTGAGAGCACACTCTTTGAT
TCAGTAGAAGGTGATGGCGCCATGATGGAAGAAGGTGTGAAATCTAGGCCCCGACAAAAGAAAACCCAGG
CCTGTTTGGCAAGCAAGCACGTGCAAGAGGCGCCAAGGTTAGAACCTGCAAATGAAGAACACAATGTGGA
AACAGCTGAAGATTCCGAAATAAGATACTTATCTGCAGATTCAGGAGATGCCGATGATTCAGATGCGGAT
TTGGGTTCTGCCGTGAAACAGCTTCAGGAGTTCATTCCTAACATCAAGGACAGGGCCACCAGCACAATCA
AGCGGATGTACCGGGACGACTTGGAACGGTTTAAGGAATTTAAAGCACAAGGTGTCGCTATTAAATTTGG
CAAGTTTTCTGTAAAGGAAAATAAGCAGTTAGAGAAAAATGTGGAAGACTTTCTAGCCCTGACAGGCATT
GAGAGTGCAGACAAGCTGCTGTACACGGACAGATATCCTGAGGAAAAATCTGTGATCACCAACTTAAAAA
GGAGATACTCGTTTAGATTACACATTGGTAGGAACATTGCCCGGCCCTGGAAACTTATATACTATCGAGC
AAAGAAGATGTTCGATGTCAACAATTACAAAGGCAGGTATAGCGAAGGAGATACTGAGAAGTTAAAGATG
TACCATTCTCTCCTTGGGAATGACTGGAAGACGATTGGTGAGATGGTGGCCCGAAGTAGCCTCTCCGTGG
CCCTCAAGTTCTCACAGATCAGCAGTCAAAGAAATCGTGGTGCTTGGAGTAAGTCTGAAACCCGGAAACT
AATCAAGGCTGTCGAAGAAGTGATTCTGAAGAAGATGTCTCCCCAGGAGTTAAAAGAGGTGGATTCCAAA
CTCCAAGAAAATCCTGAAAGTTGCCTATCAATTGTTCGGGAAAAACTCTACAAGGGCATATCTTGGGTAG
AAGTAGAAGCTAAAGTGCAAACCAGAAATTGGATGCAGTGTAAAAGTAAGTGGACAGAAATTCTAACCAA
GAGGATGACTAATGGTCGGCGTATCTACTATGGCATGAATGCCCTGCGGGCCAAGGTCAGCCTTATTGAA
AGGTTGTATGAAATAAATGTGGAAGATACTAATGAAATAGACTGGGAAGATCTTGCTAGTGCCATAGGTG
ATGTTCCTCCATCTTACGTTCAAACTAAATTTTCTAGGCTGAAAGCTGTCTATGTTCCATTTTGGCAGAA
AAAGACTTTTCCAGAGATCATCGACTACCTTTATGAGACGACTCTACCTTTGCTGAAGGAAAAGTTAGAA
AAAATGATGGAGAAAAAAGGCACTAAAATCCAGACTCCTGCAGCACCCAAGCAAGTTTTCCCATTTCGAG
ACATCTTTTATTATGAAGACGATAGTGAAGGAGAGGACATAGAAAAAGAAAGCGAAGGCCAGGCGCCATG
CATGGCTCACGCCTGTAATTCCAGTACTTTGGGAGGCCAAGGCCGGTGGATCATCTGA

Translation (905 aa):
MEGESSRFEIHTPVSDKKKKKCSIHKERPQKHSHEIFRDSSLVNEQSQITRRKKRKKDFQHLISSPLKKS
RICDETANATSTLKKRKKRRYSALEVDEEAGVTVVLVDKENINNTPKHFRKDVDVVCVDMSIEQKLPRKP
KTDKFQVLAKSHAHKSEALHSKVREKKNKKHQRKAASWESQRARDTLPQSESHQEESWLSVGPGGEITEL
PASAHKNKSKKKKKKSSNREYETLAMPEGSQAGREAGTDMQESQPTVGLDDETPQLLGPTHKKKSKKKKK
KKSNHQEFEALAMPEGSQVGSEVGADMQESRPAVGLHGETAGIPAPAYKNKSKKKKKKSNHQEFEAVAMP
ESLESAYPEGSQVGSEVGTVEGSTALKGFKESNSTKKKSKKRKLTSVKRARVSGDDFSVPSKNSESTLFD
SVEGDGAMMEEGVKSRPRQKKTQACLASKHVQEAPRLEPANEEHNVETAEDSEIRYLSADSGDADDSDAD
LGSAVKQLQEFIPNIKDRATSTIKRMYRDDLERFKEFKAQGVAIKFGKFSVKENKQLEKNVEDFLALTGI
ESADKLLYTDRYPEEKSVITNLKRRYSFRLHIGRNIARPWKLIYYRAKKMFDVNNYKGRYSEGDTEKLKM
YHSLLGNDWKTIGEMVARSSLSVALKFSQISSQRNRGAWSKSETRKLIKAVEEVILKKMSPQELKEVDSK
LQENPESCLSIVREKLYKGISWVEVEAKVQTRNWMQCKSKWTEILTKRMTNGRRIYYGMNALRAKVSLIE
RLYEINVEDTNEIDWEDLASAIGDVPPSYVQTKFSRLKAVYVPFWQKKTFPEIIDYLYETTLPLLKEKLE
KMMEKKGTKIQTPAAPKQVFPFRDIFYYEDDSEGEDIEKESEGQAPCMAHACNSSTLGGQGRWII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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