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Report for CCDS69565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69565.1 Public Homo sapiens 9 RCL1 24 110 108 CCDS HistoryNCBI Gene:10171Re-query CCDS DB by CCDS ID:69565.1Re-query CCDS DB by GeneID:10171See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381728.5 ENSP00000371147.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381728.5Link to Ensembl Protein Viewer:ENSP00000371147.1Re-query CCDS DB by Nucleotide ID:ENST00000381728Re-query CCDS DB by Protein ID:ENSP00000371147
Original member Current member EBI ENST00000381730.5 ENSP00000371149.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381730.5Link to Ensembl Protein Viewer:ENSP00000371149.1Re-query CCDS DB by Nucleotide ID:ENST00000381730Re-query CCDS DB by Protein ID:ENSP00000371149
Original member Current member EBI ENST00000448872.6 ENSP00000388096.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448872.6Link to Ensembl Protein Viewer:ENSP00000388096.2Re-query CCDS DB by Nucleotide ID:ENST00000448872Re-query CCDS DB by Protein ID:ENSP00000388096
Original member Current member NCBI NM_001286701.2 NP_001273630.1 Accepted alive Link to Nucleotide Sequence:NM_001286701.2Link to Protein Sequence:NP_001273630.1Re-query CCDS DB by Nucleotide ID:NM_001286701Re-query CCDS DB by Protein ID:NP_001273630Link to BLAST:NP_001273630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273630.1 187 Q9Y2P8-2 187 100% 0 0

Chromosomal Locations for CCDS 69565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4841206 4841357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4844525 4844681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4849447 4849550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4860125 4860275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGACATCCTTAACTCCAGGCTGCAGGTACTCTGTACGTGTGTCACCTCAGATGGCGAACCGGATTGTGG
ATTCTGCAAGGAGCATCCTCAACAAGTTCATACCTGATATCTATATTTACACAGATCACATGAAAGGAGT
CAACTCTGGGAAGTCTCCGGGCTTTGGGTTGTCACTGGTTGCTGAGACCACCAGTGGCACCTTCCTCAGT
GCTGAACTGGCCTCCAACCCCCAGGGCCAGGGAGCAGCAGTACTTCCAGAGGACCTTGGCAGGAACTGTG
CCCGGCTGCTGCTGGAGGAAATCTACAGGGGTGGATGCGTAGACTCGACCAACCAAAGCCTGGCGCTACT
ACTCATGACCCTTGGACAGCAGGATGTTTCCAAAGTCCTGCTAGGCCCTCTCTCTCCCTACACGATAGAA
TTTTTGCGGCATTTGAAGAGCTTTTTCCAGATTATGTTTAAAATTGAAACCAAGCCATGTGGTGAAGAAC
TCAAGGGTGGGGATAAAGTGCTGATGACCTGTGTTGGCATTGGTTTCTCCAACCTTAGCAAGACCCTCAA
GTGA

Translation (187 aa):
MTSLTPGCRYSVRVSPQMANRIVDSARSILNKFIPDIYIYTDHMKGVNSGKSPGFGLSLVAETTSGTFLS
AELASNPQGQGAAVLPEDLGRNCARLLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIE
FLRHLKSFFQIMFKIETKPCGEELKGGDKVLMTCVGIGFSNLSKTLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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