NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6967.1 Public Homo sapiens 9 SURF2 24 110 108 CCDS HistoryNCBI Gene:6835Re-query CCDS DB by CCDS ID:6967.1Re-query CCDS DB by GeneID:6835See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6967.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371964.5 ENSP00000361032.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371964.5Link to Ensembl Protein Viewer:ENSP00000361032.4Re-query CCDS DB by Nucleotide ID:ENST00000371964Re-query CCDS DB by Protein ID:ENSP00000361032
Original member Current member NCBI NM_017503.5 NP_059973.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017503.5Link to Protein Sequence:NP_059973.4Re-query CCDS DB by Nucleotide ID:NM_017503Re-query CCDS DB by Protein ID:NP_059973Link to BLAST:NP_059973.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059973.4 256 Q15527 256 100% 0 0

Chromosomal Locations for CCDS 6967.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133356593 133356670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133356914 133357068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133357711 133357814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133359950 133360129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133360265 133360434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133361056 133361139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGAGCGAGTTGCCGGGCGACGTGCGGGCGTTTCTGCGGGAGCACCCGAGCCTGCGGCTCCAGACGGACG
CCCGCAAGGTGAGGTGCATCCTGACAGGTCACGAGCTGCCCTGCCGCCTGCCGGAGCTCCAGGTCTACAC
CCGCGGCAAAAAGTACCAGCGGCTGGTCCGCGCCTCCCCGGCCTTCGACTATGCAGAGTTCGAGCCGCAC
ATCGTGCCCAGCACCAAGAACCCGCACCAGTTGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCC
CAGAACACGTGCTGAGGCACACCCAGGGCCGGCGGTACCAGCGAGCTCTGTGTAAATATGAAGAATGTCA
GAAGCAAGGGGTGGAGTACGTGCCTGCCTGCCTGGTGCACCGGAGGAGGAGGAGGGAGGACCAGATGGAC
GGTGACGGGCCTCGCCCGCGGGAAGCCTTCTGGGAGCCCACATCCAGTGATGAGGGGGGAGCTGCAAGTG
ATGACAGCATGACAGACCTGTACCCACCTGAGCTATTCACCAGAAAGGACCTTGGAAGCACGGAGGATGG
GGATGGCACTGATGACTTTTTGACAGACAAAGAGGATGAGAAGGCAAAGCCCCCAAGAGAGAAGGCCACT
GATGAGGGCAGGAGAGAGACGACCGTGTACCGAGGGCTGGTCCAGAAGCGCGGGAAGAAGCAGTTGGGCT
CGTTGAAAAAGAAGTTCAAGAGTCATCACCGCAAACCCAAGAGCTTCAGCTCCTGTAAACAGCCAGGTTA
A

Translation (256 aa):
MSELPGDVRAFLREHPSLRLQTDARKVRCILTGHELPCRLPELQVYTRGKKYQRLVRASPAFDYAEFEPH
IVPSTKNPHQLFCKLTLRHINKCPEHVLRHTQGRRYQRALCKYEECQKQGVEYVPACLVHRRRRREDQMD
GDGPRPREAFWEPTSSDEGGAASDDSMTDLYPPELFTRKDLGSTEDGDGTDDFLTDKEDEKAKPPREKAT
DEGRRETTVYRGLVQKRGKKQLGSLKKKFKSHHRKPKSFSSCKQPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH