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Report for CCDS70235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70235.1 Public Mus musculus 11 Derl2 23 108 98 CCDS HistoryNCBI Gene:116891Re-query CCDS DB by CCDS ID:70235.1Re-query CCDS DB by GeneID:116891See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171041.7 ENSMUSP00000127568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171041.7Link to Ensembl Protein Viewer:ENSMUSP00000127568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171041Re-query CCDS DB by Protein ID:ENSMUSP00000127568
Original member Current member NCBI NM_001291146.1 NP_001278075.1 Accepted alive Link to Nucleotide Sequence:NM_001291146.1Link to Protein Sequence:NP_001278075.1Re-query CCDS DB by Nucleotide ID:NM_001291146Re-query CCDS DB by Protein ID:NP_001278075Link to BLAST:NP_001278075.1
Original member Current member NCBI NM_001291147.1 NP_001278076.1 Accepted alive Link to Nucleotide Sequence:NM_001291147.1Link to Protein Sequence:NP_001278076.1Re-query CCDS DB by Nucleotide ID:NM_001291147Re-query CCDS DB by Protein ID:NP_001278076Link to BLAST:NP_001278076.1

Chromosomal Locations for CCDS 70235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 71010321 71010426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71013110 71013200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71013443 71013638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71014550 71014643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 71015727 71015737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGATTTTTCTATACCGTTATTGTCGAATGCTAGAAGAAGGCTCTTTCCGAGGTCGGACAGCAGACTTTG
TATTTATGTTCCTTTTTGGTGGATTTTTAATGACTCTCTTTGGTTTGTTTGTGAGCTTAGTTTTTTTAGG
CCAGGCCTTTACAATAATGCTGGTCTACGTGTGGAGCCGAAGGAACCCGTATGTCCGCATGAACTTCTTT
GGTCTTCTAAACTTCCAGGCCCCCTTCCTGCCCTGGGTGCTCATGGGGTTTTCCCTGTTGCTGGGGAACT
CAATTATAGTGGACCTTTTGGGTATTGCAGTTGGGCACATATATTTTTTCTTGGAAGATATATTTCCCAA
TCAGCCTGGTGGAATAAGAATTCTGAAAACACCATCTATTTTGAGGACTATTTTTGATACGCCAGATGAG
GATCCCAATTACAACCCACTACCTGAAGAGCGGCCGGGAGGCTTCGCCTGGGGTGAGGGCCAGCGCCTTG
GTGGGTAA

Translation (165 aa):
MIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFF
GLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIFDTPDE
DPNYNPLPEERPGGFAWGEGQRLGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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