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Report for CCDS70272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70272.1 Public Mus musculus 11 Hnf1b 23 108 98 CCDS HistoryNCBI Gene:21410Re-query CCDS DB by CCDS ID:70272.1Re-query CCDS DB by GeneID:21410See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108113.2 ENSMUSP00000103748.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108113.2Link to Ensembl Protein Viewer:ENSMUSP00000103748.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108113Re-query CCDS DB by Protein ID:ENSMUSP00000103748
Original member Current member NCBI NM_001291269.1 NP_001278198.1 Accepted alive Link to Nucleotide Sequence:NM_001291269.1Link to Protein Sequence:NP_001278198.1Re-query CCDS DB by Nucleotide ID:NM_001291269Re-query CCDS DB by Protein ID:NP_001278198Link to BLAST:NP_001278198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278198.1 435 P27889-3 435 100% 0 0

Chromosomal Locations for CCDS 70272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83855929 83856103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83861716 83861980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83863943 83864178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83882653 83882813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83889049 83889184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83893382 83893576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83896222 83896340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83904911 83904931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGATCAAGGGATACATGCAACAGCACAATATCCCCCAGAGGGAGGTGGTCGATGTCACAGGCCTGAACC
AATCCCACCTCTCTCAACACCTCAACAAGGGCACCCCCATGAAGACCCAGAAGAGAGCTGCCCTGTACAC
TTGGTACGTCAGAAAGCAACGGGAGATCCTCCGACAGTTCAACCAGACAGTCCAGAGCTCTGGAAACATG
ACAGACAAAAGCAGTCAGGATCAGCTGCTGTTTCTCTTTCCAGAGTTCAGTCAACAGAACCAGGGGCCTG
GGCAGTCGGAGGACACCTGCTCCGAGCCCACCAACAAGAAGATGCGCCGCAACCGGTTTAAATGGGGGCC
CGCATCCCAGCAAATTTTGTACCAGGCCTACGACCGGCAAAAGAATCCCAGCAAGGAAGAGAGGGAGGCC
TTAGTGGAGGAGTGTAACAGGGCAGAATGTTTGCAACGAGGGGTCTCCCCTTCCAAAGCCCACGGCCTAG
GCTCCAACTTGGTCACGGAGGTCCGTGTCTACAACTGGTTCGCAAACCGCCGGAAGGAAGAGGCGTTCAG
GCAGAAGCTGGCCATGGATGCCTATAGCTCCAACCAGACGCACAACCTGAACCCCCTGCTCACCCATGGC
TCCCCTCACCATCAGCCAAGCTCCTCTCCACCCAACAAGATGTCAGGAGTGCGCTACAACCAGCCGGGAA
ACAATGAGGTCACTTCCTCTTCGACAATCAGTCACCATGGTAACAGTGCCATGGTGACCAGCCAGTCGGT
TTTACAGCAAGTCTCCCCAGCCAGCCTGGACCCAGGCCACAGTCTCCTCTCACCTGACAGTAAAATGCAG
ATCACAGTGTCGGGAGGAGGACTGCCTCCCGTCAGCACCTTGACGAATATCCACAGCCTCTCCCACCACA
ATCCCCAGCAATCTCAGAACCTCATCATGACCCCCCTGTCTGGAGTCATGGCCATTGCACAGAGCCTCAA
CACCTCCCAAGCCCAGGGTGTCCCGGTCATTAACAGTGTGGCTAGCAGCCTGGCAGCCCTACAGCCCGTC
CAGTTCTCTCAACAGCTGCACAGCCCTCACCAGCAGCCCCTCATGCAGCAGAGCCCAGGCAGTCACATGG
CCCAGCAGCCCTTCATGGCCGCGGTGACTCAGCTACAGAACTCCCACATGTATGCACATAAGCAGGAACC
CCCCCAGTATTCCCACACCTCCCGGTTCCCATCTGCAATGGTGGTCACAGATACCAGTAGCATCAACACT
CTCACCAGCATGTCTTCCAGTAAACAGTGTCCACTGCAAGCCTGGTGA

Translation (435 aa):
MIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREILRQFNQTVQSSGNM
TDKSSQDQLLFLFPEFSQQNQGPGQSEDTCSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREA
LVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFRQKLAMDAYSSNQTHNLNPLLTHG
SPHHQPSSSPPNKMSGVRYNQPGNNEVTSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHSLLSPDSKMQ
ITVSGGGLPPVSTLTNIHSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQGVPVINSVASSLAALQPV
QFSQQLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVVTDTSSINT
LTSMSSSKQCPLQAW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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