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Report for CCDS7077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7077.1 Public Homo sapiens 10 RBM17 24 110 108 CCDS HistoryNCBI Gene:84991Re-query CCDS DB by CCDS ID:7077.1Re-query CCDS DB by GeneID:84991See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379888.9 ENSP00000369218.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379888.9Link to Ensembl Protein Viewer:ENSP00000369218.4Re-query CCDS DB by Nucleotide ID:ENST00000379888Re-query CCDS DB by Protein ID:ENSP00000369218
Original member Current member EBI ENST00000446108.5 ENSP00000388638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446108.5Link to Ensembl Protein Viewer:ENSP00000388638.1Re-query CCDS DB by Nucleotide ID:ENST00000446108Re-query CCDS DB by Protein ID:ENSP00000388638
Original member Current member NCBI NM_001145547.2 NP_001139019.1 Accepted alive Link to Nucleotide Sequence:NM_001145547.2Link to Protein Sequence:NP_001139019.1Re-query CCDS DB by Nucleotide ID:NM_001145547Re-query CCDS DB by Protein ID:NP_001139019Link to BLAST:NP_001139019.1
Original member Current member NCBI NM_032905.5 NP_116294.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032905.5Link to Protein Sequence:NP_116294.1Re-query CCDS DB by Nucleotide ID:NM_032905Re-query CCDS DB by Protein ID:NP_116294Link to BLAST:NP_116294.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139019.1 401 Q96I25 401 100% 0 0
NP_116294.1 401 Q96I25 401 100% 0 0

Chromosomal Locations for CCDS 7077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 6097066 6097188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6101271 6101387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6104931 6105097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6106141 6106238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6108686 6108742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6109986 6110127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6112210 6112361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6113508 6113581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6114049 6114147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6115239 6115311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 6115453 6115556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGTCCCTGTACGATGACCTAGGAGTGGAGACCAGTGACTCAAAAACAGAAGGCTGGTCCAAAAACTTCA
AACTTCTGCAGTCTCAGCTTCAGGTGAAGAAGGCAGCTCTCACTCAGGCAAAGAGCCAAAGGACGAAACA
AAGTACAGTCCTCGCCCCAGTCATTGACCTGAAGCGAGGTGGCTCCTCAGATGACCGGCAAATTGTGGAC
ACTCCACCGCATGTAGCAGCTGGGCTGAAGGATCCTGTTCCCAGTGGGTTTTCTGCAGGGGAAGTTCTGA
TTCCCTTAGCTGACGAATATGACCCTATGTTTCCTAATGATTATGAGAAAGTAGTGAAGCGCCAAAGAGA
GGAACGACAGAGACAGCGGGAGCTGGAAAGACAAAAGGAAATAGAAGAAAGGGAAAAAAGGCGTAAAGAC
AGACATGAAGCAAGTGGGTTTGCAAGGAGACCAGATCCAGATTCTGATGAAGATGAAGATTATGAGCGAG
AGAGGAGGAAAAGAAGTATGGGCGGAGCTGCCATTGCCCCACCCACTTCTCTGGTAGAGAAAGACAAAGA
GTTACCCCGAGATTTTCCTTATGAAGAGGACTCAAGACCTCGATCACAGTCTTCCAAAGCAGCCATTCCT
CCCCCAGTGTACGAGGAACAAGACAGACCGAGATCTCCAACCGGACCTAGCAACTCCTTCCTCGCTAACA
TGGGGGGCACGGTGGCGCACAAGATCATGCAGAAGTACGGCTTCCGGGAGGGCCAGGGTCTGGGGAAGCA
TGAGCAGGGCCTGAGCACTGCCTTGTCAGTGGAGAAGACCAGCAAGCGTGGCGGCAAGATCATCGTGGGC
GACGCCACAGAGAAAGATGCATCCAAGAAGTCAGATTCAAATCCGCTGACTGAAATACTTAAGTGTCCTA
CTAAAGTGGTCTTACTAAGGAACATGGTTGGTGCGGGAGAGGTGGATGAAGACTTGGAAGTTGAAACCAA
GGAAGAATGTGAAAAATATGGCAAAGTTGGAAAATGTGTGATATTTGAAATTCCTGGTGCCCCTGATGAT
GAAGCAGTACGGATATTTTTAGAATTTGAGAGAGTTGAATCAGCAATTAAAGCGGTTGTTGACTTGAATG
GGAGGTATTTTGGTGGACGGGTGGTAAAAGCATGTTTCTACAATTTGGACAAATTCAGGGTCTTGGATTT
GGCAGAACAAGTTTGA

Translation (401 aa):
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRGGSSDDRQIVD
TPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKRRKD
RHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIP
PPVYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVG
DATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDD
EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLAEQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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