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Report for CCDS7143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7143.1 Public Homo sapiens 10 PTF1A 24 110 108 CCDS HistoryNCBI Gene:256297Re-query CCDS DB by CCDS ID:7143.1Re-query CCDS DB by GeneID:256297See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376504.4 ENSP00000365687.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376504.4Link to Ensembl Protein Viewer:ENSP00000365687.3Re-query CCDS DB by Nucleotide ID:ENST00000376504Re-query CCDS DB by Protein ID:ENSP00000365687
Original member Current member NCBI NM_178161.3 NP_835455.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178161.3Link to Protein Sequence:NP_835455.1Re-query CCDS DB by Nucleotide ID:NM_178161Re-query CCDS DB by Protein ID:NP_835455Link to BLAST:NP_835455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835455.1 328 Q7RTS3 328 100% 0 0

Chromosomal Locations for CCDS 7143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23192531 23193314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23193704 23193906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGACGCGGTGTTGCTGGAGCACTTCCCCGGGGGCCTAGACGCCTTTCCTTCTTCGTACTTCGACGAGG
ACGACTTCTTCACCGACCAGTCTTCACGGGACCCCCTGGAGGACGGCGATGAGCTGCTGGCGGACGAGCA
GGCCGAGGTGGAGTTCCTTAGCCACCAGCTCCACGAGTACTGCTACCGCGACGGGGCGTGCCTGCTGCTG
CAGCCCGCGCCCCCGGCCGCCCCGCTAGCGCTCGCCCCGCCGTCCTCGGGGGGCCTCGGTGAGCCAGACG
ACGGCGGCGGCGGCGGCTACTGCTGCGAGACGGGGGCGCCCCCAGGCGGCTTCCCCTACTCGCCCGGCTC
GCCGCCCTCGTGCCTGGCCTACCCGTGCGCCGGGGCGGCAGTACTGTCTCCCGGGGCGCGGCTGCGCGGC
CTGAGCGGAGCGGCGGCTGCGGCGGCGCGGCGCCGGCGGCGGGTGCGCTCCGAGGCGGAGCTGCAGCAGC
TGCGGCAGGCGGCCAACGTGCGCGAGCGGCGGCGCATGCAGTCCATCAACGACGCCTTCGAGGGGCTGCG
CTCGCACATCCCCACGCTGCCCTACGAGAAGCGCCTCTCCAAGGTGGACACGCTGCGCCTGGCCATCGGC
TACATCAACTTCCTCAGCGAGCTCGTGCAGGCCGACCTGCCCTTGCGCGGCGGTGGCGCGGGCGGCTGCG
GGGGGCCGGGCGGCGGCGGGCGCCTGGGCGGGGACAGCCCGGGCAGCCAGGCCCAGAAGGTCATCATCTG
CCATCGGGGCACCCGGTCCCCCTCCCCCAGCGACCCTGATTATGGCCTCCCTCCCCTAGCAGGACACTCT
CTCTCATGGACTGATGAAAAACAACTCAAGGAACAAAATATTATCCGAACAGCCAAAGTCTGGACCCCAG
AGGACCCCAGAAAACTCAACAGCAAATCTTCCTTCAACAACATAGAAAACGAACCACCATTTGAGTTTGT
GTCCTGA

Translation (328 aa):
MDAVLLEHFPGGLDAFPSSYFDEDDFFTDQSSRDPLEDGDELLADEQAEVEFLSHQLHEYCYRDGACLLL
QPAPPAAPLALAPPSSGGLGEPDDGGGGGYCCETGAPPGGFPYSPGSPPSCLAYPCAGAAVLSPGARLRG
LSGAAAAAARRRRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIG
YINFLSELVQADLPLRGGGAGGCGGPGGGGRLGGDSPGSQAQKVIICHRGTRSPSPSDPDYGLPPLAGHS
LSWTDEKQLKEQNIIRTAKVWTPEDPRKLNSKSSFNNIENEPPFEFVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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