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Report for CCDS71541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71541.1 Public Mus musculus 5 Steap2 23 108 98 CCDS HistoryNCBI Gene:74051Re-query CCDS DB by CCDS ID:71541.1Re-query CCDS DB by GeneID:74051See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71541.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115427.7 ENSMUSP00000111087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115427.7Link to Ensembl Protein Viewer:ENSMUSP00000111087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115427Re-query CCDS DB by Protein ID:ENSMUSP00000111087
Original member Current member NCBI NM_001285471.1 NP_001272400.1 Accepted alive Link to Nucleotide Sequence:NM_001285471.1Link to Protein Sequence:NP_001272400.1Re-query CCDS DB by Nucleotide ID:NM_001285471Re-query CCDS DB by Protein ID:NP_001272400Link to BLAST:NP_001272400.1

Chromosomal Locations for CCDS 71541.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 5668079 5668105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5675841 5676005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5677317 5677844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5682534 5683022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGAATCCATCTCTATGATGGGAAGCCCTAAGAGCCTGGAGACGTTTTTGCCTAATGGCATAAATGGTA
TCAAAGACGCAAGGCAGGTCACCGTGGGGGTGATAGGAAGTGGGGATTTTGCCAAGTCTCTGACCATTCG
GCTTATTAGATGTGGCTACCACGTGGTCATAGGAAGCAGAAATCCCAAGTTTGCATCAGAATTTTTTCCT
CACGTGGTAGACGTCACCCACCATGAAGATGCTTTAACAAAAACAAATATAATATTCGTGGCTATCCATA
GAGAACATTACACCTCCTTGTGGGACCTGAGACATCTGCTTGTGGGCAAAATCCTCATTGATGTGAGCAA
CAACATGAGAGTAAACCAGTACCCAGAATCCAATGCAGAGTACCTGGCTTCATTATTCCCGGACTCCTTG
ATTGTCAAAGGATTTAATGTGATCTCAGCTTGGGCACTTCAGCTAGGTCCCAAGGATGCCAGCCGCCAGG
TTTATATATGCAGCAACAATATCCAAGCTCGACAGCAGGTTATCGAGCTCGCCCGCCAGCTGAATTTTAT
TCCTGTTGACTTGGGATCTTTGTCGTCAGCCAAGGAGATTGAAAACTTACCTCTGCGACTGTTTACTCTC
TGGAGGGGGCCAGTGGTAGTAGCCATAAGCTTGGCCACATTTTTCTTTCTTTATTCCTTTGTCAGAGATG
TGATACATCCATATGCCAGAAACCAGCAGAGTGACTTTTACAAGATTCCCATTGAGATTGTGAACAAAAC
CTTGCCGATCGTCGCCATCACCCTGCTGTCTCTGGTGTACCTGGCTGGCCTCCTGGCAGCTGCGTATCAG
CTTTATTATGGCACTAAGTACCGCCGATTTCCCCCGTGGCTGGATACTTGGCTGCAGTGCAGGAAACAGC
TGGGATTGCTGAGCTTCTTCTTTGCAGTTGTTCACGTAGCCTACAGCCTCTGCTTACCAATGAGGAGGTC
GGAAAGATACCTGTTCCTCAACATGGCTTATCAGCAGGTTCATGCCAATATTGAGAACGCGTGGAACGAG
GAGGAGGTCTGGAGGATTGAGATGTACATTTCCTTTGGCATCATGAGCCTGGGCTTGTTGTCCCTGCTGG
CGGTCACTTCCATCCCATCAGTGAGCAACGCTTTGAACTGGAGAGAGTTCAGTTTCATCCAGTGGCCCAG
AGCTGCCCTGTCCTCCTAG

Translation (402 aa):
MESISMMGSPKSLETFLPNGINGIKDARQVTVGVIGSGDFAKSLTIRLIRCGYHVVIGSRNPKFASEFFP
HVVDVTHHEDALTKTNIIFVAIHREHYTSLWDLRHLLVGKILIDVSNNMRVNQYPESNAEYLASLFPDSL
IVKGFNVISAWALQLGPKDASRQVYICSNNIQARQQVIELARQLNFIPVDLGSLSSAKEIENLPLRLFTL
WRGPVVVAISLATFFFLYSFVRDVIHPYARNQQSDFYKIPIEIVNKTLPIVAITLLSLVYLAGLLAAAYQ
LYYGTKYRRFPPWLDTWLQCRKQLGLLSFFFAVVHVAYSLCLPMRRSERYLFLNMAYQQVHANIENAWNE
EEVWRIEMYISFGIMSLGLLSLLAVTSIPSVSNALNWREFSFIQWPRAALSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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