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Report for CCDS7195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7195.1 Public Homo sapiens 10 ZNF25 24 110 108 CCDS HistoryNCBI Gene:219749Re-query CCDS DB by CCDS ID:7195.1Re-query CCDS DB by GeneID:219749See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302609.8 ENSP00000302222.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302609.8Link to Ensembl Protein Viewer:ENSP00000302222.7Re-query CCDS DB by Nucleotide ID:ENST00000302609Re-query CCDS DB by Protein ID:ENSP00000302222
Original member Current member NCBI NM_001329650.2 NP_001316579.1 Accepted alive Link to Nucleotide Sequence:NM_001329650.2Link to Protein Sequence:NP_001316579.1Re-query CCDS DB by Nucleotide ID:NM_001329650Re-query CCDS DB by Protein ID:NP_001316579Link to BLAST:NP_001316579.1
Original member Current member NCBI NM_001329651.2 NP_001316580.1 Accepted alive Link to Nucleotide Sequence:NM_001329651.2Link to Protein Sequence:NP_001316580.1Re-query CCDS DB by Nucleotide ID:NM_001329651Re-query CCDS DB by Protein ID:NP_001316580Link to BLAST:NP_001316580.1
Original member Current member NCBI NM_001329652.2 NP_001316581.1 Accepted alive Link to Nucleotide Sequence:NM_001329652.2Link to Protein Sequence:NP_001316581.1Re-query CCDS DB by Nucleotide ID:NM_001329652Re-query CCDS DB by Protein ID:NP_001316581Link to BLAST:NP_001316581.1
Original member Current member NCBI NM_001329653.2 NP_001316582.1 Accepted alive Link to Nucleotide Sequence:NM_001329653.2Link to Protein Sequence:NP_001316582.1Re-query CCDS DB by Nucleotide ID:NM_001329653Re-query CCDS DB by Protein ID:NP_001316582Link to BLAST:NP_001316582.1
Original member Current member NCBI NM_001329654.2 NP_001316583.1 Accepted alive Link to Nucleotide Sequence:NM_001329654.2Link to Protein Sequence:NP_001316583.1Re-query CCDS DB by Nucleotide ID:NM_001329654Re-query CCDS DB by Protein ID:NP_001316583Link to BLAST:NP_001316583.1
Original member Current member NCBI NM_145011.4 NP_659448.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145011.4Link to Protein Sequence:NP_659448.1Re-query CCDS DB by Nucleotide ID:NM_145011Re-query CCDS DB by Protein ID:NP_659448Link to BLAST:NP_659448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316579.1 456 P17030-1 456 100% 0 0
NP_001316580.1 456 P17030-1 456 100% 0 0
NP_001316581.1 456 P17030-1 456 100% 0 0
NP_001316582.1 456 P17030-1 456 100% 0 0
NP_001316583.1 456 P17030-1 456 100% 0 0
NP_659448.1 456 P17030-1 456 100% 0 0

Chromosomal Locations for CCDS 7195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 37952127 37953195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37953695 37953758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37957020 37957115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37957420 37957546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37971708 37971722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAACAAGTTCCAGGGACCCGTGACATTAAAGGATGTTATTGTGGAATTCACCAAGGAAGAATGGAAGT
TACTGACCCCTGCTCAGAGGACTCTGTATAAGGATGTGATGCTGGAAAACTATAGTCACCTTGTCTCAGT
GGGTTACCATGTGAATAAGCCAAATGCAGTCTTCAAGTTGAAGCAAGGAAAAGAGCCATGGATATTAGAA
GTAGAATTTCCACATCGGGGCTTCCCTGAAGACCTATGGAGCATTCATGATCTAGAAGCAAGATACCAGG
AAAGCCAAGCTGGAAATTCAAGGAATGGAGAACTCACAAAACATCAGAAAACTCATACCACAGAGAAAGC
CTGTGAATGTAAGGAATGTGGGAAGTTCTTCTGCCAGAAGTCTGCCCTCATAGTACATCAGCATACTCAC
TCAAAGGGCAAATCCTATGACTGTGATAAATGTGGGAAATCTTTCTCTAAAAATGAAGACCTCATAAGAC
ATCAGAAAATTCACACGAGAGATAAAACCTATGAGTGTAAAGAATGTAAGAAAATATTTTACCACCTATC
ATCTCTCAGTAGACATCTGAGAACCCATGCAGGAGAGAAACCCTATGAATGTAATCAGTGTGAAAAATCC
TTCTACCAGAAACCACATCTCACAGAACATCAGAAAACACACACAGGGGAGAAACCTTTTGAATGTACTG
AATGTGGGAAGTTCTTCTATGTGAAGGCATACCTCATGGTACATCAGAAAACACACACAGGGGAGAAACC
CTATGAGTGTAAGGAGTGTGGGAAAGCCTTTTCCCAGAAGTCACACCTCACAGTACATCAGAGAATGCAC
ACAGGGGAGAAACCCTATAAATGTAAGGAATGTGGGAAATTCTTCTCTAGGAATTCACACCTCAAAACTC
ATCAGAGAAGTCACACAGGAGAGAAACCCTATGAATGTAAGGAATGTAGGAAATGCTTCTACCAGAAGTC
AGCCCTCACAGTACATCAGCGAACTCACACAGGGGAGAAACCCTTTGAATGTAATAAATGTGGGAAAACA
TTTTACTATAAATCAGACCTCACTAAACATCAGAGAAAACACACAGGGGAGAAGCCCTATGAATGCACAG
AATGTGGCAAATCTTTTGCTGTGAATTCAGTCCTCAGATTACATCAAAGGACTCACACAGGAGAGAAGCC
CTATGCATGCAAGGAATGTGGGAAGTCCTTTTCTCAGAAGTCACATTTTATTATACATCAGAGAAAACAC
ACAGGGGAGAAGCCCTATGAGTGTCAGGAGTGTGGGGAAACCTTTATCCAGAAGTCACAACTCACTGCAC
ATCAGAAGACACACACAAAGAAGAGGAATGCTGAGAAGTAA

Translation (456 aa):
MNKFQGPVTLKDVIVEFTKEEWKLLTPAQRTLYKDVMLENYSHLVSVGYHVNKPNAVFKLKQGKEPWILE
VEFPHRGFPEDLWSIHDLEARYQESQAGNSRNGELTKHQKTHTTEKACECKECGKFFCQKSALIVHQHTH
SKGKSYDCDKCGKSFSKNEDLIRHQKIHTRDKTYECKECKKIFYHLSSLSRHLRTHAGEKPYECNQCEKS
FYQKPHLTEHQKTHTGEKPFECTECGKFFYVKAYLMVHQKTHTGEKPYECKECGKAFSQKSHLTVHQRMH
TGEKPYKCKECGKFFSRNSHLKTHQRSHTGEKPYECKECRKCFYQKSALTVHQRTHTGEKPFECNKCGKT
FYYKSDLTKHQRKHTGEKPYECTECGKSFAVNSVLRLHQRTHTGEKPYACKECGKSFSQKSHFIIHQRKH
TGEKPYECQECGETFIQKSQLTAHQKTHTKKRNAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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