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Report for CCDS7202.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7202.2 Public Homo sapiens 10 RASGEF1A 24 110 108 CCDS HistoryNCBI Gene:221002Re-query CCDS DB by CCDS ID:7202.2Re-query CCDS DB by GeneID:221002See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7202.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395809.5 ENSP00000379154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395809.5Link to Ensembl Protein Viewer:ENSP00000379154.1Re-query CCDS DB by Nucleotide ID:ENST00000395809Re-query CCDS DB by Protein ID:ENSP00000379154
Original member Current member EBI ENST00000395810.6 ENSP00000379155.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395810.6Link to Ensembl Protein Viewer:ENSP00000379155.1Re-query CCDS DB by Nucleotide ID:ENST00000395810Re-query CCDS DB by Protein ID:ENSP00000379155
Original member Current member NCBI NM_145313.4 NP_660356.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145313.4Link to Protein Sequence:NP_660356.2Re-query CCDS DB by Nucleotide ID:NM_145313Re-query CCDS DB by Protein ID:NP_660356Link to BLAST:NP_660356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660356.2 481 Q8N9B8-1 481 100% 0 0

Chromosomal Locations for CCDS 7202.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43196244 43196268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43196476 43196548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43196976 43197099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43198004 43198195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43198933 43199012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43199092 43199194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43199676 43199768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43200182 43200256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43200667 43200888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43201808 43201945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43203298 43203420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43205919 43206116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGCCCCAGACGTCCGTTGTCTTCTCCAGCATCCTTGGGCCCAGCTGTAGCGGACAGGTGCAGCCTGGCA
TGGGGGAGCGTGGAGGCGGGGCCGGTGGCGGCTCCGGGGACCTCATCTTCCAAGATGGACACCTCATCTC
TGGGTCCCTGGAGGCCCTGATGGAGCACCTTGTTCCCACGGTGGACTATTACCCCGATAGGACGTACATC
TTCACCTTTCTCCTGAGCTCCCGGGTCTTTATGCCCCCTCATGACCTGCTGGCCCGCGTGGGGCAGATCT
GCGTGGAGCAGAAGCAGCAGCTGGAAGCCGGGCCTGAAAAGGCCAAGCTGAAGTCTTTCTCAGCCAAGAT
CGTGCAGCTCCTGAAGGAGTGGACCGAGGCCTTCCCCTATGACTTCCAGGATGAGAAGGCCATGGCCGAG
CTGAAAGCCATCACACACCGTGTCACCCAGTGTGATGAGGAGAATGGCACAGTGAAGAAGGCCATTGCCC
AGATGACACAGAGCCTGTTGCTGTCCTTGGCTGCCCGGAGCCAGCTCCAGGAACTGCGAGAGAAGCTCCG
GCCACCGGCTGTAGACAAGGGGCCCATCCTCAAGACCAAGCCACCAGCCGCCCAGAAGGACATCCTGGGC
GTGTGCTGCGACCCCCTGGTGCTGGCCCAGCAGCTGACTCACATTGAGCTGGACAGGGTCAGCAGCATTT
ACCCTGAGGACTTGATGCAGATCGTCAGCCACATGGACTCCTTGGACAACCACAGGTGCCGAGGGGACCT
GACCAAGACCTACAGCCTGGAGGCCTATGACAACTGGTTCAACTGCCTGAGCATGCTGGTGGCCACTGAG
GTGTGCCGGGTGGTGAAGAAGAAACACCGGACCCGCATGTTGGAGTTCTTCATTGATGTGGCCCGGGAGT
GCTTCAACATCGGGAACTTCAACTCCATGATGGCCATCATCTCTGGCATGAACCTCAGTCCTGTGGCAAG
GCTGAAGAAAACTTGGTCCAAGGTCAAGACAGCCAAGTTTGATGTCTTGGAGCATCACATGGACCCGTCC
AGCAACTTCTGCAACTACCGTACAGCCCTGCAGGGGGCCACGCAGAGGTCCCAGATGGCCAACAGCAGCC
GTGAAAAGATCGTCATCCCTGTGTTCAACCTCTTCGTTAAGGACATCTACTTCCTGCACAAAATCCATAC
CAACCACCTGCCCAACGGGCACATTAACTTTAAGAAATTCTGGGAGATCTCCAGACAGATCCATGAGTTC
ATGACATGGACACAGGTAGAGTGTCCTTTCGAGAAGGACAAGAAGATTCAGAGTTACCTGCTCACGGCGC
CCATCTACAGCGAGGAAGCTCTCTTCGTCGCCTCCTTTGAAAGTGAGGGTCCCGAGAACCACATGGAAAA
AGACAGCTGGAAGACCCTCAGGACCACCCTTCTGAACAGAGCCTGA

Translation (481 aa):
MPQTSVVFSSILGPSCSGQVQPGMGERGGGAGGGSGDLIFQDGHLISGSLEALMEHLVPTVDYYPDRTYI
FTFLLSSRVFMPPHDLLARVGQICVEQKQQLEAGPEKAKLKSFSAKIVQLLKEWTEAFPYDFQDEKAMAE
LKAITHRVTQCDEENGTVKKAIAQMTQSLLLSLAARSQLQELREKLRPPAVDKGPILKTKPPAAQKDILG
VCCDPLVLAQQLTHIELDRVSSIYPEDLMQIVSHMDSLDNHRCRGDLTKTYSLEAYDNWFNCLSMLVATE
VCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDVLEHHMDPS
SNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWEISRQIHEF
MTWTQVECPFEKDKKIQSYLLTAPIYSEEALFVASFESEGPENHMEKDSWKTLRTTLLNRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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