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Report for CCDS7228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7228.1 Public Homo sapiens 10 VSTM4 24 110 108 CCDS HistoryNCBI Gene:196740Re-query CCDS DB by CCDS ID:7228.1Re-query CCDS DB by GeneID:196740See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7228.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298454.3 ENSP00000298454.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298454.3Link to Ensembl Protein Viewer:ENSP00000298454.3Re-query CCDS DB by Nucleotide ID:ENST00000298454Re-query CCDS DB by Protein ID:ENSP00000298454
Original member Current member NCBI NM_144984.4 NP_659421.1 Accepted alive Link to Nucleotide Sequence:NM_144984.4Link to Protein Sequence:NP_659421.1Re-query CCDS DB by Nucleotide ID:NM_144984Re-query CCDS DB by Protein ID:NP_659421Link to BLAST:NP_659421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659421.1 191 Q8IW00-2 191 100% 0 0

Chromosomal Locations for CCDS 7228.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49103742 49103860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49107594 49107995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49115431 49115485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCGGCTGCTGGCACTGGCGGCGGCCGCGCTGCTGGCGCGGGCTCCGGCTCCGGAGGTCTGTGCGGCCC
TCAATGTCACTGTGTCCCCGGGGCCCGTGGTTGACTACCTGGAGGGGGAGAATGCCACTCTCCTCTGCCA
CGTCTCCCAGAAAAGGCGGAAGGACAGCTTGCTGGCCGTGCGCTGGTTCTTTGCACACTCCTTCGACTCC
CAGGAGGCCTTGATGGTGAAGATGACCAAGCTCCGGGTGGTGCAGTACTATGGGAATTTCAGCCGCAGCG
CCAAACGGCGGAGGCTGCGCCTGCTGGAGGAGCAGCGGGGGGCGCTCTACAGGCTCTCCGTCTTGACACT
GCAGCCCTCCGATCAAGGGCATTACGTCTGCAGAGTCCAGGAAATCAGCAGGCACAGGAACAAGTGGACG
GCCTGGTCCAATGGCTCCTCAGCCACGGAAATGAGAGGAGTCTCCAGCCATCCAGTGGAGAGGGGAGCTT
TTCTTGGGATTTCCCTTGTAATACTACCTCACTCTTTGCCCTTCACCGCAGACTTAACCATGGCCTCCTT
CCTGCAGAGTTCTTGA

Translation (191 aa):
MRLLALAAAALLARAPAPEVCAALNVTVSPGPVVDYLEGENATLLCHVSQKRRKDSLLAVRWFFAHSFDS
QEALMVKMTKLRVVQYYGNFSRSAKRRRLRLLEEQRGALYRLSVLTLQPSDQGHYVCRVQEISRHRNKWT
AWSNGSSATEMRGVSSHPVERGAFLGISLVILPHSLPFTADLTMASFLQSS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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