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Report for CCDS7250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7250.1 Public Homo sapiens 10 IPMK 24 110 108 CCDS HistoryNCBI Gene:253430Re-query CCDS DB by CCDS ID:7250.1Re-query CCDS DB by GeneID:253430See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373935.4 ENSP00000363046.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373935.4Link to Ensembl Protein Viewer:ENSP00000363046.3Re-query CCDS DB by Nucleotide ID:ENST00000373935Re-query CCDS DB by Protein ID:ENSP00000363046
Original member Current member NCBI NM_152230.5 NP_689416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152230.5Link to Protein Sequence:NP_689416.1Re-query CCDS DB by Nucleotide ID:NM_152230Re-query CCDS DB by Protein ID:NP_689416Link to BLAST:NP_689416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689416.1 416 Q8NFU5 416 100% 0 0

Chromosomal Locations for CCDS 7250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 58196076 58196698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58199240 58199321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58216145 58216317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58227043 58227139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58237729 58237814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58267422 58267611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGGCAACAGAGCCACCATCCCCCCTCCGGGTCGAGGCGCCGGGCCCCCCAGAAATGCGGACCTCACCGG
CGATCGAGTCCACCCCTGAGGGCACCCCGCAGCCGGCGGGCGGCAGACTCCGCTTCCTCAACGGCTGCGT
GCCCCTCTCGCATCAGGTGGCCGGGCACATGTACGGGAAGGACAAAGTGGGTATACTGCAACATCCAGAT
GGCACAGTTTTGAAACAGTTACAACCACCTCCAAGGGGCCCAAGAGAGCTGGAATTCTATAATATGGTTT
ATGCTGCTGACTGTTTTGATGGTGTTCTTCTAGAGCTACGAAAATATTTGCCAAAATATTATGGCATCTG
GTCACCTCCCACTGCACCAAACGATTTATACCTAAAACTGGAAGATGTGACCCATAAATTTAATAAGCCC
TGTATAATGGATGTAAAGATAGGGCAAAAAAGCTATGATCCTTTTGCCTCATCTGAGAAGATTCAGCAAC
AGGTCAGCAAGTACCCATTAATGGAAGAGATTGGGTTCTTGGTGCTTGGCATGAGGGTTTATCATGTTCA
TTCCGATAGCTATGAGACAGAAAACCAGCATTACGGAAGAAGCTTAACAAAAGAAACTATAAAGGATGGA
GTCTCCAGATTTTTTCATAATGGGTACTGCTTAAGAAAAGATGCTGTTGCTGCCAGTATTCAGAAGATTG
AGAAAATTCTGCAGTGGTTTGAAAACCAGAAGCAGCTTAATTTTTACGCAAGTTCATTACTCTTTGTTTA
TGAAGGTTCATCTCAGCCAACCACTACAAAATTGAATGACAGAACTTTGGCAGAAAAGTTTTTGTCCAAA
GGACAACTGTCAGACACAGAAGTACTAGAGTACAATAATAACTTTCATGTGTTAAGTTCCACAGCTAATG
GAAAAATAGAGTCTTCAGTGGGCAAAAGCTTGTCCAAGATGTATGCGCGTCACAGGAAAATATATACAAA
AAAGCATCACAGTCAGACTTCATTGAAAGTTGAAAATCTGGAGCAAGACAATGGGTGGAAAAGCATGTCA
CAGGAACATTTAAATGGAAATGTACTTTCCCAACTGGAAAAAGTTTTCTACCATCTTCCCACTGGTTGCC
AAGAGATTGCTGAAGTAGAAGTGCGAATGATAGATTTTGCTCATGTGTTCCCTAGCAACACAATAGATGA
GGGATATGTTTATGGGCTAAAGCATTTAATTTCTGTACTTCGAAGTATTTTAGACAATTGA

Translation (416 aa):
MATEPPSPLRVEAPGPPEMRTSPAIESTPEGTPQPAGGRLRFLNGCVPLSHQVAGHMYGKDKVGILQHPD
GTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPNDLYLKLEDVTHKFNKP
CIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEIGFLVLGMRVYHVHSDSYETENQHYGRSLTKETIKDG
VSRFFHNGYCLRKDAVAASIQKIEKILQWFENQKQLNFYASSLLFVYEGSSQPTTTKLNDRTLAEKFLSK
GQLSDTEVLEYNNNFHVLSSTANGKIESSVGKSLSKMYARHRKIYTKKHHSQTSLKVENLEQDNGWKSMS
QEHLNGNVLSQLEKVFYHLPTGCQEIAEVEVRMIDFAHVFPSNTIDEGYVYGLKHLISVLRSILDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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